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AT3G48680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23761796 (2013): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:20197505 (2010): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18189341 (2008): mitochondrion
  • PMID:17406791 (2007): mitochondrion
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12837548 (2003): mitochondrion
  • PMID:11743115 (2001): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : gamma carbonic anhydrase-like 2
Curator
Summary (TAIR10)
Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.
Computational
Description (TAIR10)
gamma carbonic anhydrase-like 2 (GAMMA CAL2); FUNCTIONS IN: transferase activity; INVOLVED IN: photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase like 1 (TAIR:AT5G63510.1); Has 6263 Blast hits to 6236 proteins in 1756 species: Archae - 151; Bacteria - 4130; Metazoa - 15; Fungi - 10; Plants - 165; Viruses - 0; Other Eukaryotes - 1792 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G48680-MONOMERBioCyc:MetaCyc:AT3G48680-MONOMERBioGrid:9347eggNOG:COG0663eggNOG:ENOG410IJ9JEMBL:AF360214EMBL:AL133315
EMBL:AY051017EMBL:CP002686EnsemblPlants:AT3G48680EnsemblPlants:AT3G48680.1entrez:824029GeneID:824029Genevisible:Q9SMN1
GO:GO:0005739GO:GO:0005747GO:GO:0005774GO:GO:0009507GO:GO:0009651GO:GO:0009737GO:GO:0009853
GO:GO:0010228GO:GO:0031966GO:GO:0045271GO:GO:0046872Gramene:AT3G48680.1hmmpanther:PTHR13061hmmpanther:PTHR13061:SF0
HOGENOM:HOG000049430InParanoid:Q9SMN1IntAct:Q9SMN1InterPro:IPR011004iPTMnet:Q9SMN1KEGG:ath:AT3G48680OMA:VESDVMI
PaxDb:Q9SMN1Pfam:Q9SMN1PhylomeDB:Q9SMN1PIR:T46212PRIDE:Q9SMN1PRO:PR:Q9SMN1ProteinModelPortal:Q9SMN1
Proteomes:UP000006548RefSeq:NP_190437.1SMR:Q9SMN1STRING:3702.AT3G48680.1SUPFAM:SSF51161TAIR:AT3G48680tair10-symbols:GAMMA CAL2
UniGene:At.24698UniGene:At.72948UniGene:At.75571UniProt:Q9SMN1
Coordinates (TAIR10) chr3:+:18035107..18036773
Molecular Weight (calculated) 27957.70 Da
IEP (calculated) 8.87
GRAVY (calculated) 0.04
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSLARISK RSITSAVSSN LIRRYFAAEA VAVATTETPK PKSQVTPSPD RVKWDYRGQR QIIPLGQWLP KVAVDAYVAP NVVLAGQVTV WDGSSVWNGA
101: VLRGDLNKIT VGFCSNVQER CVVHAAWSSP TGLPAQTLID RYVTVGAYSL LRSCTIEPEC IIGQHSILME GSLVETRSIL EAGSVLPPGR RIPSGELWGG
201: NPARFIRTLT NEETLEIPKL AVAINHLSGD YFSEFLPYST IYLEVEKFKK SLGIAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)