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AT3G48640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.875
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT5G66670.2); Has 42 Blast hits to 42 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AL133315EMBL:CP002686EnsemblPlants:AT3G48640EnsemblPlants:AT3G48640.1entrez:824024GeneID:824024GO:GO:0016021
Gramene:AT3G48640.1hmmpanther:PTHR31113hmmpanther:PTHR31113:SF3KEGG:ath:AT3G48640PhylomeDB:Q9SMN5PIR:T46208Proteomes:UP000006548
RefSeq:NP_190433.1STRING:3702.AT3G48640.1TAIR:AT3G48640TMHMM:TMhelixUniGene:At.35701UniProt:Q9SMN5
Coordinates (TAIR10) chr3:-:18021650..18022324
Molecular Weight (calculated) 25634.10 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.23
Length 224 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSVQEVYKI LADLKVLNQD VANTITTNGL HVSWNEGLKS IANLYLENTT KTLNLFEKFM YTEEVVTQYV CQVNVYWDHV TTNWDHVTTK TRKLSEKFMY
101: TDEFATQYES VYRDHVMLLG KIRELEVVLE KKYKHAKRKR IMKFGFGAVI FIPCFVVAVV GQLNPAFGMA GQGGERGVEV AKKLYKLTME EDNSMETTLL
201: GLSRLIGNTT KGNIEAMEKI KSHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)