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AT3G48600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SWIB complex BAF60b domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 322 Blast hits to 306 proteins in 73 species: Archae - 0; Bacteria - 9; Metazoa - 1; Fungi - 75; Plants - 216; Viruses - 3; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5531eggNOG:KOG1946EMBL:CP002686EnsemblPlants:AT3G48600
EnsemblPlants:AT3G48600.1entrez:824020ExpressionAtlas:F4JF33Gene3D:1.10.245.10
GeneID:824020Gramene:AT3G48600.1hmmpanther:PTHR13844hmmpanther:PTHR13844:SF12
InterPro:IPR003121InterPro:IPR019835PaxDb:F4JF33Pfam:PF02201
PRIDE:F4JF33ProteinModelPortal:F4JF33Proteomes:UP000006548RefSeq:NP_190429.2
SMART:SM00151SMR:F4JF33STRING:3702.AT3G48600.2SUPFAM:SSF47592
TAIR:AT3G48600UniGene:At.35707UniProt:F4JF33
Coordinates (TAIR10) chr3:-:18010289..18011363
Molecular Weight (calculated) 20292.30 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.16
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPISKILGG CRTLMAKAVT NATATGAGVD RRGGIHKIFP VSESLARFVG QSEVSFSTAM EKVEQYTDDH NLWNPENIEE ILCDDNLKTI FDGQDKVVGV
101: REMTELLLRH FPNVRTMSAK VKATGGGTIE KWGFNDIVKV SEPLARFVGQ SEISFDAALR KLLDYAFDHK LVDEGVTLLE FPW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)