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AT3G48590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit C1
Curator
Summary (TAIR10)
Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5A) and expressed in vegetative and reproductive tissues.
Computational
Description (TAIR10)
nuclear factor Y, subunit C1 (NF-YC1); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C4 (TAIR:AT5G63470.2); Has 1348 Blast hits to 1348 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 449; Fungi - 353; Plants - 430; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).
Protein Annotations
BioGrid:9337eggNOG:COG5208eggNOG:KOG1657EMBL:AL133315
EMBL:AY086120EMBL:AY092997EMBL:BT001206EMBL:CP002686
EMBL:Y13726EnsemblPlants:AT3G48590EnsemblPlants:AT3G48590.1entrez:824019
Gene3D:1.10.20.10GeneID:824019Genevisible:Q9SMP0GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0016602GO:GO:0045893Gramene:AT3G48590.1hmmpanther:PTHR10252
hmmpanther:PTHR10252:SF39HOGENOM:HOG000200436InParanoid:Q9SMP0IntAct:Q9SMP0
InterPro:IPR003958InterPro:IPR009072KEGG:ath:AT3G48590OMA:LFWTYQR
PaxDb:Q9SMP0Pfam:PF00808Pfam:Q9SMP0PhylomeDB:Q9SMP0
PIR:T46203PRIDE:Q9SMP0PRO:PR:Q9SMP0ProteinModelPortal:Q9SMP0
Proteomes:UP000006548Reactome:R-ATH-2426168RefSeq:NP_190428.1SMR:Q9SMP0
STRING:3702.AT3G48590.1SUPFAM:SSF47113TAIR:AT3G48590tair10-symbols:ATHAP5A
tair10-symbols:HAP5Atair10-symbols:NF-YC1UniGene:At.23009UniProt:Q9SMP0
Coordinates (TAIR10) chr3:-:18008893..18009938
Molecular Weight (calculated) 25330.00 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.41
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)