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AT3G48550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1J3eggNOG:ENOG410YR7NEMBL:AL133315EMBL:AY086607EMBL:BT024699EMBL:CP002686EnsemblPlants:AT3G48550
EnsemblPlants:AT3G48550.1entrez:824014GeneID:824014Gramene:AT3G48550.1hmmpanther:PTHR34946HOGENOM:HOG000239095IntAct:Q9SMP3
KEGG:ath:AT3G48550ncoils:CoilOMA:CLEITCHPhylomeDB:Q9SMP3PIR:T46199Proteomes:UP000006548RefSeq:NP_190424.1
STRING:3702.AT3G48550.1TAIR:AT3G48550UniGene:At.35711UniProt:Q9SMP3
Coordinates (TAIR10) chr3:+:17994048..17994595
Molecular Weight (calculated) 18353.90 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.84
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEQQDHHKE LQLLPSPPST ESPVRKHRPT VITTDHHNNH HRSSSMIHHD LDLKLSISLS SISTAEELPN GGVEALKWQA AEQIRLAAIE KAYAERVREL
101: TRREMEMAQS EFARARVMWQ KAREEVERAE RLKERSMTKI DTACLEITCH SCRQRFRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)