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AT3G48460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G28650.1); Has 3350 Blast hits to 3305 proteins in 164 species: Archae - 0; Bacteria - 220; Metazoa - 0; Fungi - 10; Plants - 3113; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G48460-MONOMEREC:3.1.1.-eggNOG:ENOG410IFUTeggNOG:ENOG410YD8Z
EMBL:AL049659EMBL:BT003839EMBL:BT005192EMBL:CP002686
EnsemblPlants:AT3G48460EnsemblPlants:AT3G48460.1entrez:824005Gene3D:3.40.50.1110
GeneID:824005Genevisible:Q9STM6GO:GO:0005576GO:GO:0016042
GO:GO:0016788Gramene:AT3G48460.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF231
HOGENOM:HOG000237651InParanoid:Q9STM6InterPro:IPR001087InterPro:IPR013830
iPTMnet:Q9STM6KEGG:ath:AT3G48460OMA:WNAYRAVPaxDb:Q9STM6
Pfam:PF00657Pfam:Q9STM6PhylomeDB:Q9STM6PIR:T06696
PRIDE:Q9STM6PRO:PR:Q9STM6ProteinModelPortal:Q9STM6Proteomes:UP000006548
RefSeq:NP_190416.1STRING:3702.AT3G48460.1SUPFAM:SSF52266TAIR:AT3G48460
TMHMM:TMhelixUniGene:At.28118UniGene:At.71623UniProt:Q9STM6
Coordinates (TAIR10) chr3:+:17949496..17951082
Molecular Weight (calculated) 42237.30 Da
IEP (calculated) 7.84
GRAVY (calculated) -0.11
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSISPLLT TAISVAILLF STISTAATIP NIHRPFNKIY AFGDSFTDTG NSRSGEGPAG FGHLSSPPYG MTFFRRPTNR YSDGRLTIDF VAESMNLPFL
101: PPYLSLKTTN ANGTATDTHG VNFAVSGSTV IKHAFFVKNN LSLDMTPQSI ETELAWFEKY LETLGTNQKV SLFKDSLFWI GEIGVNDYAY TLGSTVSSDT
201: IRELSISTFT RFLETLLNKG VKYMLVQGHP ATGCLTLAMS LAAEDDRDSL GCVQSANNQS YTHNLALQSK LKQLRIKYPS ATIVYADYWN AYRAVIKHPS
301: KYGITEKFKA CCGIGEPYNF QVFQTCGTDA ATVCKDPNQY INWDGVHLTE AMYKVMADMF LDGTFTRPRF SDLLIKKLNY L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)