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AT3G48450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.939
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RPM1-interacting protein 4 (RIN4) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RPM1-interacting protein 4 (RIN4) family protein; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT5G63270.1); Has 297 Blast hits to 296 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 295; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JPVIeggNOG:ENOG4111597EMBL:AY086630EMBL:BT024804EMBL:CP002686EnsemblPlants:AT3G48450EnsemblPlants:AT3G48450.1
entrez:824004GeneID:824004Gramene:AT3G48450.1hmmpanther:PTHR33159hmmpanther:PTHR33159:SF4HOGENOM:HOG000241039InterPro:IPR008700
KEGG:ath:AT3G48450OMA:PINNESHPfam:PF05627PhylomeDB:Q8LCF4Proteomes:UP000006548RefSeq:NP_566905.1TAIR:AT3G48450
UniGene:At.35721UniProt:Q8LCF4
Coordinates (TAIR10) chr3:-:17944232..17944788
Molecular Weight (calculated) 10110.80 Da
IEP (calculated) 11.05
GRAVY (calculated) -1.31
Length 89 amino acids
Sequence (TAIR10)
(BLAST)
1: MATGNRARPL PKFGEWDATN PGSAEGFTVI FNKARDDKKT MKTAVAGPES IVSPPRNEEP PKNNNNHHHN HHTRHSQTPR SKKKWLCFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)