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AT3G48420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G39970.1); Has 12560 Blast hits to 12559 proteins in 2179 species: Archae - 78; Bacteria - 10284; Metazoa - 135; Fungi - 145; Plants - 385; Viruses - 3; Other Eukaryotes - 1530 (source: NCBI BLink).
Protein Annotations
EC:3.1.3.-eggNOG:COG0637eggNOG:KOG2914EMBL:AF370250EMBL:AK118118EMBL:AK175866EMBL:AK175977
EMBL:AK176795EMBL:AL049659EMBL:AY063066EMBL:AY086642EMBL:CP002686EnsemblPlants:AT3G48420EnsemblPlants:AT3G48420.1
entrez:824000Gene3D:3.40.50.1000GeneID:824000Genevisible:Q94K71GO:GO:0009507GO:GO:0009570GO:GO:0009941
GO:GO:0016787GO:GO:0046872Gramene:AT3G48420.1gramene_pathway:2.7.1.26gramene_pathway:2.7.7.2gramene_pathway:RIBOSYN2-PWYhmmpanther:PTHR18901
hmmpanther:PTHR18901:SF9HOGENOM:HOG000248341InParanoid:Q94K71InterPro:IPR006439InterPro:IPR023214KEGG:ath:AT3G48420OMA:KVGWPEN
PaxDb:Q94K71PDB:4UAVPDBsum:4UAVPfam:PF13419Pfam:Q94K71PhylomeDB:Q94K71PIR:T06700
PRIDE:Q94K71PRO:PR:Q94K71ProteinModelPortal:Q94K71Proteomes:UP000006548RefSeq:NP_566903.1SMR:Q94K71STRING:3702.AT3G48420.1
SUPFAM:SSF56784TAIR:AT3G48420TIGRfam:TIGR01509TIGRFAMs:TIGR01509UniGene:At.3168UniProt:Q94K71
Coordinates (TAIR10) chr3:+:17929743..17931551
Molecular Weight (calculated) 34247.30 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.05
Length 319 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVKISLSL ASLSPSSSSS SIQSKLSPSF IPNAAPAKAV KLRFNGKSLR AKPMVYRSSR SVGVTCSASS SLTTLPSALL FDCDGVLVDT EKDGHRISFN
101: DTFKERDLNV TWDVDLYGEL LKIGGGKERM TAYFNKVGWP EKAPKDEAER KEFIAGLHKQ KTELFMVLIE KKLLPLRPGV AKLVDQALTN GVKVAVCSTS
201: NEKAVSAIVS CLLGPERAEK IKIFAGDVVP KKKPDPAIYN LAAETLGVDP SKCVVVEDSA IGLAAAKAAG MTCIVTKSGY TADEDFENAD AVFDCIGDPP
301: EERFDLAFCG SLLRKQFVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)