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AT3G48150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : anaphase-promoting complex subunit 8
Curator
Summary (TAIR10)
anaphase-promoting complex or cyclosome subunit
Computational
Description (TAIR10)
anaphase-promoting complex subunit 8 (APC8); FUNCTIONS IN: binding; INVOLVED IN: cell cycle, regulation of mitotic metaphase/anaphase transition; LOCATED IN: anaphase-promoting complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Cdc23 (InterPro:IPR007192), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G16320.1); Has 14789 Blast hits to 8989 proteins in 1164 species: Archae - 889; Bacteria - 6197; Metazoa - 2204; Fungi - 825; Plants - 603; Viruses - 0; Other Eukaryotes - 4071 (source: NCBI BLink).
Protein Annotations
BioGrid:9289eggNOG:ENOG410XPS3eggNOG:KOG1155EMBL:AK220695EMBL:AL096856EMBL:AY056217EMBL:AY057562
EMBL:AY099779EMBL:BT000289EMBL:CP002686EnsemblPlants:AT3G48150EnsemblPlants:AT3G48150.1entrez:823970Gene3D:1.25.40.10
GeneID:823970Genevisible:Q9STS3GO:GO:0005680GO:GO:0007067GO:GO:0016567GO:GO:0030071GO:GO:0031347
GO:GO:0051301Gramene:AT3G48150.1hmmpanther:PTHR12558hmmpanther:PTHR12558:SF10HOGENOM:HOG000115852InParanoid:Q9STS3IntAct:Q9STS3
InterPro:IPR007192InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734iPTMnet:Q9STS3KEGG:ath:AT3G48150KO:K03355
ncoils:CoilOMA:EDEMEWEPaxDb:Q9STS3Pfam:PF00515Pfam:PF04049Pfam:PF13176Pfam:PF13181
Pfam:PF13414Pfam:Q9STS3Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q9STS3PIR:T13004PRIDE:Q9STS3
PRO:PR:Q9STS3PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:Q9STS3Proteomes:UP000006548Reactome:R-ATH-174184Reactome:R-ATH-179409
RefSeq:NP_190398.1SMART:SM00028SMR:Q9STS3STRING:3702.AT3G48150.1SUPFAM:SSF48452TAIR:AT3G48150tair10-symbols:APC8
tair10-symbols:CDC23UniGene:At.26312UniPathway:UPA00143UniProt:Q9STS3
Coordinates (TAIR10) chr3:-:17779800..17782565
Molecular Weight (calculated) 67138.10 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.43
Length 579 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)