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AT3G48140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : B12D protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B12D protein; CONTAINS InterPro DOMAIN/s: B12D (InterPro:IPR010530); BEST Arabidopsis thaliana protein match is: B12D protein (TAIR:AT3G29970.1); Has 143 Blast hits to 143 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0Z8eggNOG:ENOG41125P8EMBL:AK317041EMBL:AL096856EMBL:AY081326EMBL:BT001183EMBL:CP002686
EMBL:F19976EnsemblPlants:AT3G48140EnsemblPlants:AT3G48140.1entrez:823969GeneID:823969GO:GO:0005777GO:GO:0016021
Gramene:AT3G48140.1hmmpanther:PTHR33417hmmpanther:PTHR33417:SF2HOGENOM:HOG000242252InterPro:IPR010530KEGG:ath:AT3G48140OMA:GINEYFY
Pfam:PF06522PhylomeDB:Q42338PIR:T13003Proteomes:UP000006548RefSeq:NP_190397.1STRING:3702.AT3G48140.1SwissPalm:Q42338
TAIR:AT3G48140TMHMM:TMhelixUniGene:At.66502UniProt:Q42338
Coordinates (TAIR10) chr3:+:17778471..17779299
Molecular Weight (calculated) 10020.10 Da
IEP (calculated) 9.95
GRAVY (calculated) -0.38
Length 88 amino acids
Sequence (TAIR10)
(BLAST)
1: MASRWLRPEV YPLFAATGVA VGICAFSLIR NITGNPEVRC TKENRAAGIL DNHAEGEKYK ENFLRKFVRN KKPEIMPGLN KFFTDPTY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)