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AT3G48110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-tRNA ligases
Curator
Summary (TAIR10)
glycine-tRNA ligase
Computational
Description (TAIR10)
EMBRYO-DEFECTIVE-DEVELOPMENT 1 (EDD1); FUNCTIONS IN: glycine-tRNA ligase activity; INVOLVED IN: regulation of embryonic development, glycyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal (InterPro:IPR002311), Glycyl-tRNA synthetase, class II, heterodimeric (InterPro:IPR006194), Glycyl-tRNA synthetase, class IIc, beta subunit (InterPro:IPR015944), Glycyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR002310); Has 11308 Blast hits to 11293 proteins in 1754 species: Archae - 4; Bacteria - 6864; Metazoa - 4; Fungi - 1; Plants - 40; Viruses - 0; Other Eukaryotes - 4395 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G48110-MONOMERBRENDA:6.1.1.14EC:6.1.1.14eggNOG:COG0751eggNOG:COG0752eggNOG:ENOG410IHACEMBL:AJ003069
EMBL:AL049658EMBL:AY136413EMBL:BT012191EMBL:CP002686EnsemblPlants:AT3G48110EnsemblPlants:AT3G48110.1entrez:823966
GeneID:823966Genevisible:Q8L785GO:GO:0004820GO:GO:0005524GO:GO:0005739GO:GO:0006426GO:GO:0009507
GO:GO:0009570GO:GO:0009793GO:GO:0045995GO:GO:0046983HAMAP:MF_00254HAMAP:MF_00255hmmpanther:PTHR30075
hmmpanther:PTHR30075:SF3HOGENOM:HOG000264303InParanoid:Q8L785InterPro:IPR002310InterPro:IPR006194InterPro:IPR015944iPTMnet:Q8L785
KEGG:ath:AT3G48110KO:K14164OMA:AYVEPSIPaxDb:Q8L785Pfam:PF02091Pfam:PF02092Pfam:Q8L785
Pfscan:PS50861PhylomeDB:Q8L785PIR:T06672PIR:T48850PRIDE:Q8L785PRINTS:PR01044PRO:PR:Q8L785
PROSITE:PS50861ProteinModelPortal:Q8L785Proteomes:UP000006548RefSeq:NP_190394.3SMR:Q8L785STRING:3702.AT3G48110.1SUPFAM:SSF109604
SUPFAM:SSF55681TAIR:AT3G48110tair10-symbols:EDDtair10-symbols:EDD1TIGRfam:TIGR00211TIGRfam:TIGR00388TIGRFAMs:TIGR00211
TIGRFAMs:TIGR00388UniGene:At.22692UniProt:Q8L785
Coordinates (TAIR10) chr3:+:17763111..17770964
Molecular Weight (calculated) 119780.00 Da
IEP (calculated) 5.80
GRAVY (calculated) -0.15
Length 1067 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAILHFSLPL IVSFLRPHAS PRFFLLPRSL SQSPFLSRRR FHRTSAVSSA AVHHQSYRNP DDDVTRAVSV PTFQQAIQRL QEYWASVGCA VMQPSNTEVG
0101: AGTMNPCTFL RVLGPEPWNV AYVEPSIRPD DSRYGENPNR LQRHTQFQVI LKPDPGNSQQ LFINSLSALG IDVTAHDIRF VEDNWESPVL GAWGLGWEIW
0201: MDGMEITQFT YFQQAGSLPL SPVSVEITYG LERIIMLLQE VDHFKKILYA DGITYGELFL ENEKEMSSYY LEHASVDRLQ KHFDYFDEEA RSLLALGLPI
0301: PAYDQLLKTS HAFNILDARG FIGVTERARY FGRMRSLARQ CAQLWLATRE SLGHPLGVAS EPVPPVCHRA ALEKVAEKVS EDPRSFIIEI GTEEMPPQDV
0401: INASEQLRVL VLELLENQRL RHGAVKAFGT PRRLVVLVDA MSSKQLEEEV EVRGPPASKA FDDEGNPTKA AEGFSRRYGV PLEKLYRKVS GKTEYVHARV
0501: TEPARLALEV LSEDLPGILA KISFPKSMRW NSSVMFSRPI RWVMALHGDL VVPFSFAGIS SGNVSCGLRN TASASLLVQN AESYEDTMRN SGINIEIEER
0601: KKIILEKSNA LAKSVSGRLV VPQNLLNEVA NLVEAPVPLI GKFKESFLEL PEELLTIVMQ KHQKYFSIID ESGQLLPYFI AVANGAINED VVKKGNEAVL
0701: RARYEDAKFF YEVDTRKRFS EFRDQLQGIL FHEKLGTMLD KMNRLKKMVS KLCLALKIDE DLLPVVEDAA SLAMSDLATA VVTEFTALSG IMARHYALRD
0801: GYSEQIAEAL LEITLPRFSG DVIPKTDAGM VLAIGDRLDS LVGLFAAGCQ PSSTNDPFGL RRISYGLVQI LVEKDKNVNF KRVLELAASV QPTKVEANTV
0901: EDVYQFVTRR LEQLLVDNGV SPEVVRSVLA ERGNNPCLAA RTAYKTEKLS KGEMFPKIVE AYSRPTRIVR GKDVGVGVEV DENAFETPQE RTLWSTYTSI
1001: KDRIHTGIEI EDFTEISMQL VEPLEDFFNN VFVMVEEERV RKNRLALLNN IANLPKGVID LSFLPGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)