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AT3G48100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : response regulator 5
Curator
Summary (TAIR10)
Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.
Computational
Description (TAIR10)
response regulator 5 (RR5); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 6 (TAIR:AT5G62920.1); Has 45766 Blast hits to 45301 proteins in 2636 species: Archae - 240; Bacteria - 40380; Metazoa - 18; Fungi - 471; Plants - 1420; Viruses - 2; Other Eukaryotes - 3235 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AB008488EMBL:AB010916EMBL:AK226519EMBL:AY072390EnsemblPlants:AT3G48100
EnsemblPlants:AT3G48100.1entrez:823965ExpressionAtlas:Q0WW39GeneID:823965GO:GO:0000156GO:GO:0000160GO:GO:0005622
Gramene:AT3G48100.1hmmpanther:PTHR26402hmmpanther:PTHR26402:SF526IntAct:Q9SB04InterPro:IPR001789InterPro:IPR011006KEGG:ath:AT3G48100
KO:K14492OMA:KTIRADDPaxDb:Q0WW39Pfam:PF00072Pfam:Q9SB04Pfscan:PS50110PhylomeDB:Q0WW39
PIR:T50855PROSITE:PS50110ProteinModelPortal:Q0WW39RefSeq:NP_190393.1SMART:SM00448SMR:Q0WW39STRING:3702.AT3G48100.1
SUPFAM:SSF52172TAIR:AT3G48100tair10-symbols:ARR5tair10-symbols:ATRR2tair10-symbols:IBC6tair10-symbols:RR5UniGene:At.24915
UniProt:Q0WW39UniProt:Q9SB04
Coordinates (TAIR10) chr3:-:17759112..17760740
Molecular Weight (calculated) 20880.50 Da
IEP (calculated) 5.89
GRAVY (calculated) -0.20
Length 184 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEVLRPEML DISNDTSSLA SPKLLHVLAV DDSMVDRKFI ERLLRVSSCK VTVVDSATRA LQYLGLDGEN NSSVGFEDLK INLIMTDYSM PGMTGYELLK
101: KIKESSAFRE IPVVIMSSEN ILPRIDRCLE EGAEDFLLKP VKLADVKRLR DSLMKAEERA FKNIMHKREL EANDIYSQLK RAKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)