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AT3G48020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.834
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JS2HeggNOG:ENOG4111C8VEMBL:AK176116EMBL:AL049658EMBL:BT014851EMBL:CP002686EnsemblPlants:AT3G48020
EnsemblPlants:AT3G48020.1entrez:823957GeneID:823957Gramene:AT3G48020.1hmmpanther:PTHR13833HOGENOM:HOG000239476KEGG:ath:AT3G48020
OMA:FSMRYASPhylomeDB:Q9SU65PIR:T06681Proteomes:UP000006548RefSeq:NP_190385.1STRING:3702.AT3G48020.1TAIR:AT3G48020
UniGene:At.49396UniProt:Q9SU65
Coordinates (TAIR10) chr3:+:17724593..17725000
Molecular Weight (calculated) 15643.10 Da
IEP (calculated) 7.42
GRAVY (calculated) -0.81
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVGQANPLL GESSCCSTTV KSSWWQRIHR NNHQEPRWWV RAFLKIREWS EIVAGPRWKT FIRRFNRDPR RGQDWDDSDK FRYDPVSYTL SFEDEDKDDD
101: DEAGVGGVRS FSMRYASVPV ASGKSPAVIS VDAVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)