AT3G48010.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.996 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cyclic nucleotide-gated channel 16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
member of Cyclic nucleotide gated channel family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
cyclic nucleotide-gated channel 16 (CNGC16); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 18 (TAIR:AT5G14870.1); Has 3330 Blast hits to 3084 proteins in 251 species: Archae - 0; Bacteria - 33; Metazoa - 1612; Fungi - 37; Plants - 1021; Viruses - 0; Other Eukaryotes - 627 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:17721335..17724028 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 81959.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 705 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSNLHLYTSA RFRNFPTTFS LRHHHNDPNN QRRRSIFSKL RDKTLDPGGD LITRWNHIFL ITCLLALFLD PLYFYLPIVQ AGTACMSIDV RFGIFVTCFR 101: NLADLSFLIH ILLKFKTAFV SKSSRVFGRG ELVMDRREIA IRYLKSEFVI DLAATLPLPQ IMIWFVIPNA GEFRYAAHQN HTLSLIVLIQ YVPRFLVMLP 201: LNRRIIKATG VAAKTAWSGA AYNLILYLLV SHVLGSVWYV LSIQRQHECW RRECIKEMNA THSPSCSLLF LDCGSLHDPG RQAWMRITRV LSNCDARNDD 301: DQHFQFGMFG DAFTNDVTSS PFFDKYFYCL WWGLRNLSSY GQSLAASTLS SETIFSCFIC VAGLVFFSHL IGNVQNYLQS TTARLDEWRV RRRDTEEWMR 401: HRQLPDELQE RVRRFVQYKW LTTRGVDEEA ILRALPLDLR RQIQRHLCLA LVRRVPFFAQ MDDQLLDAIC ERLVPSLNTK DTYVIREGDP VNEMLFIIRG 501: QMESSTTDGG RSGFFNSITL RPGDFCGEEL LTWALVPNIN HNLPLSTRTV RTLSEVEAFA LRAEDLKFVA NQFRRLHSKK LQHAFRYYSH QWRAWGTCFI 601: QAAWRRYMKR KLAMELARQE EEDDYFYDDD GDYQFEEDMP ESNNNNGDEN SSNNQNLSAT ILASKFAANT KRGVLGNQRG STRIDPDHPT LKMPKMFKPE 701: DPGFF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)