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AT3G47990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SUGAR-INSENSITIVE 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SUGAR-INSENSITIVE 3 (SIS3); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: sugar mediated signaling pathway; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G66070.1); Has 9412 Blast hits to 9385 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 2601; Fungi - 698; Plants - 4895; Viruses - 18; Other Eukaryotes - 1200 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK117391
EMBL:AL049658EMBL:CP002686EnsemblPlants:AT3G47990EnsemblPlants:AT3G47990.1
entrez:823954Gene3D:3.30.40.10GeneID:823954Genevisible:Q8GYT9
GO:GO:0004842GO:GO:0008270GO:GO:0010182GO:GO:0016021
GO:GO:0016567GO:GO:0016874Gramene:AT3G47990.1hmmpanther:PTHR14155
hmmpanther:PTHR14155:SF120HOGENOM:HOG000077621InParanoid:Q8GYT9InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT3G47990KO:K16284OMA:INWKRYR
PaxDb:Q8GYT9Pfam:PF13639Pfam:Q8GYT9Pfscan:PS50089
PhylomeDB:Q8GYT9PIR:T06684PRIDE:Q8GYT9PRO:PR:Q8GYT9
PROSITE:PS50089ProteinModelPortal:Q8GYT9Proteomes:UP000006548RefSeq:NP_190382.2
SMART:SM00184SMR:Q8GYT9STRING:3702.AT3G47990.1SUPFAM:SSF57850
TAIR:AT3G47990tair10-symbols:SIS3TMHMM:TMhelixUniGene:At.21725
UniPathway:UPA00143UniProt:Q8GYT9
Coordinates (TAIR10) chr3:-:17713367..17716051
Molecular Weight (calculated) 40688.30 Da
IEP (calculated) 6.34
GRAVY (calculated) 0.14
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMRGVDFKW YDGFFLSMLA TSVIIVAVNW NRYRACEYPL HIWIVVDYTT VFIFRVFMFV DNGLASGLGL DFGSQQRNAM FCGRVVVLSV LSLLLYPFLW
101: AWTVIGTQWF TKSKTCLPEE GQKWGFLIWL MFSYCGLLCI AFICVGKWLT RRQVHLLRAQ QGIPISEFGI LVDMIRVPDW AFEAAGQEMR GISQDAATYH
201: PGLYLTPAQT EAVEALIQEL PKFRLKAVPD DCGECLICLE EFHIGHEVRG LPCAHNFHVE CIDQWLRLNV KCPRCRCSVF PDLDLSALSN LQSSGTEQHS
301: QVNTETSEAR YIRSQPQSES YFLRVQSLIH PVHTDTALET AENGGVPPVL TDLSPSRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)