AT3G47960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G62680.1); Has 3941 Blast hits to 3750 proteins in 534 species: Archae - 0; Bacteria - 697; Metazoa - 584; Fungi - 378; Plants - 2186; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17698126..17700771 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71043.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.28 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 636 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSRVILNHR DRRDKNHNNN NTNHYTQVDT MERKPLEVEP STTTTNTDVV DSFEEEQRKI VYRGWKVMPF IIGNETFEKL GIIGTLSNLL VYLTSVFNLK 101: SYTAATIINA FSGTINFGTF IAAFLCDTYF GRYKTLSVAV IACFLGSFVI LLTAAIPSLH PVACGNKISC EGPSVGQILF LLMGLGFLVV GAGGIRPCNL 201: AFGADQFNPK SESGKKGINS FFNWYFFTFT FAQIISLTAV VYIQSNVSWT IGLIIPVALM FLACVIFFAG DRLYVKVKAS GSPLAGIARV IAAAIKKRGL 301: KPVKQPWVNL YNHIPSNYAN TTLKYTDQFR FLDKAAIMTP EEKLNSDGTA SDPWKLCTLQ QVEEVKCIVR VIPIWFASTI YYLAITIQMT YPVFQALQSD 401: RRLGSGGFRI PAATYVVFLM TGMTVFIIFY DRVLVPSLRR VTGLETGISL LQRIGAGFTF AIMSLLVSGF IEERRRNFAL TKPTLGMAPR TGEISSMSAL 501: WLIPQLTLAG IAEAFAAIGQ MEFYYKQFPE NMKSFAGSIF YVGAGVSSYL ASFLISTVHR TTAHSPSGNW LAEDLNKAKL DYFYFMLTGL MVVNMAYFLL 601: MARWYRYKGG NDEDITEIET NEEETKQQQL QDKNSV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)