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AT3G47860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloroplastic lipocalin
Curator
Summary (TAIR10)
Encodes a chloroplastic lipocalin AtCHL. Located in thylakoid lumen. Involved in the protection of thylakoidal membrane lipids against reactive oxygen species, especially singlet oxygen, produced upon excess light.
Computational
Description (TAIR10)
chloroplastic lipocalin (CHL); FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin-like (InterPro:IPR013208), Lipocalin conserved site (InterPro:IPR022272), Calycin (InterPro:IPR012674), Calycin-like (InterPro:IPR011038); Has 184 Blast hits to 184 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 66; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-266-MONOMEReggNOG:COG3040eggNOG:KOG4824EMBL:AL049746EMBL:AY035165EMBL:AY044334EMBL:BT003002
EMBL:CP002686EnsemblPlants:AT3G47860EnsemblPlants:AT3G47860.1entrez:823942Gene3D:2.40.128.20GeneID:823942Genevisible:Q9STS7
GO:GO:0006629GO:GO:0006979GO:GO:0009408GO:GO:0009414GO:GO:0009507GO:GO:0009535GO:GO:0009543
GO:GO:0009644GO:GO:0009737GO:GO:0010431GO:GO:0031977GO:GO:0045735GO:GO:0046322GO:GO:1901562
Gramene:AT3G47860.1hmmpanther:PTHR11430hmmpanther:PTHR11430:SF32HOGENOM:HOG000029210InterPro:IPR000566InterPro:IPR011038InterPro:IPR012674
InterPro:IPR022272iPTMnet:Q9STS7KEGG:ath:AT3G47860OMA:AIQVDTFPaxDb:Q9STS7Pfam:PF08212PhylomeDB:Q9STS7
PIR:T07725PRO:PR:Q9STS7PROSITE:PS00213ProteinModelPortal:Q9STS7Proteomes:UP000006548RefSeq:NP_190370.1scanprosite:PS00213
SMR:Q9STS7STRING:3702.AT3G47860.1SUPFAM:SSF50814TAIR:AT3G47860tair10-symbols:CHLUniGene:At.3254UniProt:Q9STS7
Coordinates (TAIR10) chr3:-:17656778..17658269
Molecular Weight (calculated) 39118.10 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.22
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MILLSSSISL SRPVSSQSFS PPAATSTRRS HSSVTVKCCC SSRRLLKNPE LKCSLENLFE IQALRKCFVS GFAAILLLSQ AGQGIALDLS SGYQNICQLG
101: SAAAVGENKL TLPSDGDSES MMMMMMRGMT AKNFDPVRYS GRWFEVASLK RGFAGQGQED CHCTQGVYTF DMKESAIRVD TFCVHGSPDG YITGIRGKVQ
201: CVGAEDLEKS ETDLEKQEMI KEKCFLRFPT IPFIPKLPYD VIATDYDNYA LVSGAKDKGF VQVYSRTPNP GPEFIAKYKN YLAQFGYDPE KIKDTPQDCE
301: VTDAELAAMM SMPGMEQTLT NQFPDLGLRK SVQFDPFTSV FETLKKLVPL YFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)