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AT3G47850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 57 Blast hits to 57 proteins in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWE7eggNOG:ENOG410XWF7EMBL:CP002686EnsemblPlants:AT3G47850
EnsemblPlants:AT3G47850.1entrez:823941GeneID:823941GO:GO:0009507
Gramene:AT3G47850.1hmmpanther:PTHR36764hmmpanther:PTHR36764:SF1InParanoid:F4JCQ8
iPTMnet:F4JCQ8KEGG:ath:AT3G47850ncoils:CoilOMA:TSVFRES
PaxDb:F4JCQ8PRIDE:F4JCQ8Proteomes:UP000006548RefSeq:NP_190369.2
TAIR:AT3G47850UniGene:At.26259UniProt:F4JCQ8
Coordinates (TAIR10) chr3:-:17654256..17656000
Molecular Weight (calculated) 39224.10 Da
IEP (calculated) 10.16
GRAVY (calculated) -0.94
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MQVEIPSPYD HGSRRQRRIR RTEETQKQKK MVAISMYRGN LHKVPDVPRR WIMPDRNLSF KDFKSLLHRR KKALSRLPLN PNLNLSVKTE LVTDQENPIL
101: PSEANGSSGK QKLFEVKREE ICGNRVKGDE NNDRGFEGAR SDGGDRPGRV TESKETDNVP HKYAAKEEET NEAAEKVPSE TELKRKEVEE RLQVLNAKKH
201: NLVQVLKQIL NAEEELKRRS YMQQQGTTVA TRPSLPLHVD VSNDSGGNVG THMEGGETDD AANHNNAQTR TLLRLCGASS SSESPLRRAA ALSQHNMVPH
301: TSRWSPLVGP SQPGPAVTVS ASGTNYIASS PSPAGFGGTS VFRESRLQSP WN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)