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AT3G47810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.818
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Calcineurin-like metallo-phosphoesterase superfamily protein
Curator
Summary (TAIR10)
Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.
Computational
Description (TAIR10)
MAIGO 1 (MAG1); FUNCTIONS IN: hydrolase activity, acting on ester bonds, protein serine/threonine phosphatase activity; INVOLVED IN: endosome to lysosome transport, protein targeting to vacuole; LOCATED IN: microsome, retromer complex, membrane, multivesicular body; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphodiesterase MJ0936 (InterPro:IPR000979); Has 1298 Blast hits to 1264 proteins in 597 species: Archae - 104; Bacteria - 671; Metazoa - 203; Fungi - 159; Plants - 64; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G47810-MONOMERBioCyc:ARA:GQT-2524-MONOMERBioCyc:ARA:GQT-2525-MONOMERBioGrid:9255eggNOG:COG0622eggNOG:KOG3325EMBL:AK317472
EMBL:AL049746EMBL:BT002774EMBL:BT004347EMBL:CP002686EnsemblPlants:AT3G47810EnsemblPlants:AT3G47810.1EnsemblPlants:AT3G47810.2
EnsemblPlants:AT3G47810.3entrez:823935Gene3D:3.60.21.10GeneID:823935Genevisible:Q9STT2GO:GO:0001881GO:GO:0005771
GO:GO:0005794GO:GO:0006623GO:GO:0007034GO:GO:0016020GO:GO:0030904GO:GO:0031902GO:GO:0042147
GO:GO:0043231Gramene:AT3G47810.1Gramene:AT3G47810.2Gramene:AT3G47810.3hmmpanther:PTHR11124HOGENOM:HOG000293431InParanoid:Q9STT2
IntAct:Q9STT2InterPro:IPR000979InterPro:IPR024654InterPro:IPR029052KEGG:ath:AT3G47810KO:K18467OMA:AFENENK
PANTHER:PTHR11124PaxDb:Q9STT2Pfam:PF12850Pfam:Q9STT2PhylomeDB:Q9STT2PIR:T07720PRIDE:Q9STT2
PRO:PR:Q9STT2ProteinModelPortal:Q9STT2Proteomes:UP000006548RefSeq:NP_190365.3RefSeq:NP_974399.2RefSeq:NP_974400.1SMR:Q9STT2
STRING:3702.AT3G47810.1SUPFAM:SSF56300TAIR:AT3G47810tair10-symbols:ATVPS29tair10-symbols:MAG1tair10-symbols:VPS29TIGRfam:TIGR00040
TIGRFAMs:TIGR00040UniGene:At.3249UniGene:At.48748UniProt:Q9STT2
Coordinates (TAIR10) chr3:-:17637256..17639017
Molecular Weight (calculated) 20969.50 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.02
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLVLALGDL HVPHRAADLP PKFKSMLVPG KIQHIICTGN LCIKEIHDYL KTICPDLHIV RGEFDEDARY PENKTLTIGQ FKLGLCHGHQ VIPWGDLDSL
101: AMLQRQLGVD ILVTGHTHQF TAYKHEGGVV INPGSATGAY SSINQDVNPS FVLMDIDGFR AVVYVYELID GEVKVDKIEF KKPPTTSSGP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)