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AT3G47740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ABC2 homolog 2
Curator
Summary (TAIR10)
member of ATH subfamily
Computational
Description (TAIR10)
ABC2 homolog 2 (ATH2); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP binding cassette subfamily A4 (TAIR:AT3G47750.1); Has 384271 Blast hits to 352930 proteins in 4003 species: Archae - 7236; Bacteria - 304580; Metazoa - 7828; Fungi - 4908; Plants - 4743; Viruses - 12; Other Eukaryotes - 54964 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G47740-MONOMEReggNOG:COG1131eggNOG:KOG0059EMBL:AL049746
EMBL:CP002686EMBL:DQ446742EnsemblPlants:AT3G47740EnsemblPlants:AT3G47740.1
entrez:823928Gene3D:3.40.50.300GeneID:823928Genevisible:Q1PEH6
GO:GO:0005215GO:GO:0005524GO:GO:0016021GO:GO:0016887
Gramene:AT3G47740.1hmmpanther:PTHR19229hmmpanther:PTHR19229:SF127HOGENOM:HOG000029960
InParanoid:Q1PEH6InterPro:IPR003439InterPro:IPR003593InterPro:IPR017871
InterPro:IPR026082InterPro:IPR027417KEGG:ath:AT3G47740OMA:FTKEMRC
PANTHER:PTHR19229PaxDb:Q1PEH6Pfam:PF00005Pfam:PF12698
Pfam:Q1PEH6Pfscan:PS50893PIR:T07713PRIDE:Q1PEH6
PRO:PR:Q1PEH6PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q1PEH6
Proteomes:UP000006548RefSeq:NP_190358.3scanprosite:PS00211SMART:SM00382
SMR:Q1PEH6STRING:3702.AT3G47740.1SUPFAM:SSF52540TAIR:AT3G47740
tair10-symbols:ABCA3tair10-symbols:ATATH2tair10-symbols:ATH2TMHMM:TMhelix
UniGene:At.53821UniProt:Q1PEH6
Coordinates (TAIR10) chr3:+:17600651..17604965
Molecular Weight (calculated) 105343.00 Da
IEP (calculated) 8.85
GRAVY (calculated) 0.02
Length 932 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSGPASFW TRANAILRKN LTYQKRNIWS NVRLIMIPFY LCIVLVFIQA LFDSQVNNSL DNQCGCQCID KLGDGKCQMT CGLEYSTRDQ GFFCAIPKPQ
101: PWPPLILIPR PEYRALDANF TNDSCRRKNS CPVTILFTGN NHSLGAVLSR NLLRRPFAMN SSDLLFSLAN NVLATTFKGS ATNYLDAGIV SDGSIYNIQP
201: RCPPNSNFSI SIGQSPLNFT KDMRCVQGLN LWRNNSIEVN LELFEGYHKG NSDGMINEIV AAYDLFDTNM TNFNVNIWFN ATYKDEARNQ PYKVVRVPRL
301: VNWVSNAYLQ YLQGPRTKML FEFVKEMPKP ETKLRLDIAS LIGPIFFTWV ILLLLPVILN SLVYEKQQRL RIIMKMHGLG DGPYWIISYA YFLALSTFYI
401: IFLMIFGSVI GLKFFLLNDF SLQFSFYFVY INLQISIAFL LSSAFSKVET ASVAAYLYVF GSGLLGMFLF QFLLEGLSFP RRWIFVMELY PGFSLYRGLY
501: EFSQNAYQGN LNGKDGMKWK YFSDNAIDEV FYIIIVEWFV ALIATYYIDK MSSSGKDLLF FLKNQNPFKI SHSLQKQVSA ISVEMEKLDV IHESEKVAQL
601: MLESSTSHAI VCDKLRKVYP GRDGNPPKKA VRVLSLAVPS GECFGMLGPN GAGKTSFINM MTGLVKPTSG AAFVQGLDIC KDMDRVYTSM GVCPQHDLLW
701: ETLTGREHLL FYGRLKNLKG VDLNQAVEES LRSVNLFHGG VADKPAGKYS GGMKRRLSVA ISLIGNPKVV YMDEPSTGLD PASRKNLWTV IKNAKRHTAI
801: ILTTHSMEEA EFLCDRLGIF VDGRLQCIGN PKELKGRYGG SYVLTMTTSS EHEKDVEMLV QEVSPNVKKI YHIAGTQKFE IPKDEVRISE VFQVVEKAKS
901: NFKVFAWGLA DTTLEDVFIK VARTAQAFNV FS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)