AT3G47700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 ASURE: endoplasmic reticulum What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RINT-1 / TIP-1 family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Involved in transportation of seed storage proteins from the ER to the vacuole. Mutant seed cell accumulates the precursors of 12S globulin and 2S albumin instead of the vacuolar-located mature proteins. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
maigo2 (MAG2); CONTAINS InterPro DOMAIN/s: RINT-1/TIP-1 (InterPro:IPR007528); BEST Arabidopsis thaliana protein match is: RINT-1 / TIP-1 family (TAIR:AT1G08400.1); Has 297 Blast hits to 297 proteins in 143 species: Archae - 16; Bacteria - 48; Metazoa - 107; Fungi - 71; Plants - 47; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17583773..17586578 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90237.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 795 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAIKPLPQV SSFSASVFSF LDGRFKESTD LSHSTGLVSE LQTEISELDQ RLAGLNRQLE SGLAAYASFS DRVGGLFFEV NAKLADLSSS TSVTRSASDS 101: GKEEEATEHV AGEDLPSLAK EVAQVESVRA YAETALKLDT LVGDIEDAVM SSLNKNLRTS RSSGFEEVRL HAIKTLKTTE EILSSVAKRH PRWARLVSAV 201: DHRVDRALAM MRPQAIADYR ALLSSLRWPP QLSTLTSASL DSKSENVQNP LFNMEGSLKS QYCGSFHALC SLQGLQLQRK SRQLGIHKGE NVLFHQPLWA 301: IEELVNPLTV ASQRHFTKWS EKPEFIFALV YKITRDYVDS MDELLQPLVD EAKLAGYSCR EEWVSAMVSS LSLYLVKEIF PIYVGQLDEA NETDLRSEAK 401: VSWLHLIDLM ISFDKRVQSL VSQSGILSLQ EDGNLLRISS LSVFCDRPDW LDLWAEIELD ERLVKFKEEI DNDRNWTAKV QDELISSSNV YRPPIISSIF 501: LQHLSSIIER SKSVPALYLR ARFLRLAASP TIHKFLDCLL LRCQDADGLT ALTENNDLIK VSNSINAGHY IESVLEEWSE DVFFLEMGTG QHDPQEVPGL 601: ENFTEPSEGI FGEEFEKLEK FRLEWINKLS VVILRGFDAR IREYIKNRKQ WQEKKDKEWT VSRALVGALD YLQGKTSIIE ENLNKADFTA MWRTLASEID 701: KLFFNSILMA NVKFTNDGVE RLKVDMEVLY GVFRTWCVRP EGFFPKLSEG LTLLKMEEKQ VKDGLSRGDK WLRENRIRYL SEAEAKKVAK SRVFS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)