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AT3G47670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.499
endoplasmic reticulum 0.306
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: pectin methylesterase 1 (TAIR:AT1G53840.1); Has 898 Blast hits to 891 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 898; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JDBQeggNOG:ENOG4111CFVEMBL:CP002686EnsemblPlants:AT3G47670EnsemblPlants:AT3G47670.1entrez:823921Gene3D:1.20.140.40
GeneID:823921GO:GO:0004857GO:GO:0005794GO:GO:0016021Gramene:AT3G47670.1hmmpanther:PTHR31707hmmpanther:PTHR31707:SF47
InParanoid:F4JCN4InterPro:IPR006501KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT3G47670ncoils:CoilOMA:LKIVCAV
PaxDb:F4JCN4Pfam:PF04043PRIDE:F4JCN4ProteinModelPortal:F4JCN4Proteomes:UP000006548RefSeq:NP_190351.2SMART:SM00856
SUPFAM:SSF101148TAIR:AT3G47670TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelixUniGene:At.48747unipathway:UPA00545
UniProt:F4JCN4
Coordinates (TAIR10) chr3:-:17575019..17575849
Molecular Weight (calculated) 30392.30 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.21
Length 276 amino acids
Sequence (TAIR10)
(BLAST)
001: MQQSFTFQLL PVDFFSPKIT DSSSSNFLRS KNHYPSMESI NTLKGYDKVS DQENQIHHHH HSPLPKPSSF SRKTLIATGS VVSLLLILSV VALTAGAFTH
101: SPPHHPPISS ASLKSLCSVT RYPETCFNSL SSSLNESDSK LNPESILELS LRVAAKEISN LSISFRSIND MPEDAAVGDC VKLYTDALSQ LNDSITEIER
201: KKKKGGNNWL TEEVVGDVKT WISAAMTDGE TCSDGIEEMG TIVGNEIKKK MEMANQMMSI SLAIVSQMKK LLLIFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)