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AT3G47620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Curator
Summary (TAIR10)
Encodes a transcription factor AtTCP14 that regulates seed germination. AtTCP14 shows elevated expression level just prior to germination. AtTCP14 is predominantly expressed in the vascular tissue of the embryo, and affects gene expression in radicles in a non-cell-autonomous manner.
Computational
Description (TAIR10)
TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (TCP14); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G58100.1); Has 1158 Blast hits to 1082 proteins in 149 species: Archae - 2; Bacteria - 69; Metazoa - 397; Fungi - 50; Plants - 507; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
Protein Annotations
BioGrid:9236eggNOG:ENOG410IX0UeggNOG:ENOG410YEAMEMBL:AL132955EMBL:AY058874EMBL:AY103304EMBL:CP002686
EnsemblPlants:AT3G47620EnsemblPlants:AT3G47620.1entrez:823916GeneID:823916Genevisible:Q93Z00GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0008283GO:GO:0009735GO:GO:0009737GO:GO:0009739
GO:GO:0010029GO:GO:0010229GO:GO:0031347Gramene:AT3G47620.1hmmpanther:PTHR31072hmmpanther:PTHR31072:SF29HOGENOM:HOG000241759
InParanoid:Q93Z00IntAct:Q93Z00InterPro:IPR005333InterPro:IPR017887KEGG:ath:AT3G47620OMA:TFPSINTPaxDb:Q93Z00
Pfam:PF03634Pfam:Q93Z00Pfscan:PS51369PhylomeDB:Q93Z00PIR:T45722PRIDE:Q93Z00PRO:PR:Q93Z00
PROSITE:PS51369ProteinModelPortal:Q93Z00Proteomes:UP000006548RefSeq:NP_190346.2STRING:3702.AT3G47620.1TAIR:AT3G47620tair10-symbols:AtTCP14
tair10-symbols:TCP14UniGene:At.21251UniProt:Q93Z00
Coordinates (TAIR10) chr3:+:17559004..17560473
Molecular Weight (calculated) 52302.90 Da
IEP (calculated) 7.13
GRAVY (calculated) -0.83
Length 489 amino acids
Sequence (TAIR10)
(BLAST)
001: MQKPTSSILN VIMDGGDSVG GGGGDDHHRH LHHHHRPTFP FQLLGKHDPD DNHQQQPSPS SSSSLFSLHQ HQQLSQSQPQ SQSQKSQPQT TQKELLQTQE
101: ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH
201: FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ
301: HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM
401: NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)