AT3G47460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Structural maintenance of chromosomes (SMC) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of SMC subfamily | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATSMC2; FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: chromosome; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1); Has 105566 Blast hits to 56901 proteins in 3202 species: Archae - 1526; Bacteria - 19204; Metazoa - 44960; Fungi - 8478; Plants - 5252; Viruses - 457; Other Eukaryotes - 25689 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17486765..17493178 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132322.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1171 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MHIKEICLEG FKSYATRTVV PGFDPHFNAI TGLNGSGKSN ILDSICFVLG ITNLQQVRAA NLQELVYKQG QAGITRATVS VTFDNSERNR SPLGHEDHSE 0101: ITVTRQIVVG GKNKYLINGK LAQPNQVQNL FHSVQLNVNN PHFLIMQGRI TKVLNMKPME ILSMLEEAAG TRMYENKKEA ALKTLEKKQT KVDEINKLLE 0201: KDILPALEKL RREKSQYMQW ANGNAELDRL KRFCVAFEYV QAEKIRDNSI HVVEEMKIKM TGIDEQTDKT QGEISELEKQ IKALTQAREA SMGGEVKALS 0301: DKVDSLSNEV TRELSKLTNM EDTLQGEEKN AEKMVHNIED LKKSVEERAS ALNKCDEGAA ELKQKFQEFS TTLEECEREH QGILAGKSSG DEEKCLEDQL 0401: RDAKISVGTA ETELKQLNTK ISHCEKELKE KKSQLMSKQD EAVAVENELD ARKNDVESVK RAFDSLPYKE GQMEALEKDR ESELEIGHRL KDKVHELSAQ 0501: LANVQFTYRD PVKNFDRSKV KGVVAKLIKV NDRSSMTALE VTAGGKLFNV IVDTEDTGKQ LLQKGDLRRR VTIIPLNKIQ SHLVPPRVQQ ATVGKGNAEL 0601: ALSLVGYSEE LKNAMEYVFG STFVCKTTDA AKEVAFNREI RTPSVTLEGD VFQPSGLLTG GSRKGGGDLL RQLHDLAEAE TKFRAHQKSL SEIEANIKEL 0701: QPLQTKFTDM KAQLELKMYD MSLFLKRAEQ NEHHKLGDAV KKLEEEVEEM RSQIKEKEGL YKSCADTVST LEKSIKDHDK NREGRLKDLE KNIKTLKARI 0801: QASSKDLKGH ENVRERLVME QEAVTQEQSY LKSQLTSLRT QISTLASDVG NQRAKVDAIQ KDHDQSLSEL KLIHAKMKEC DTQISGSIAE QEKCLQKISD 0901: MKLDRKKLEN EVTRMEMEHK NCSVKVDKLV EKHTWITSEK RLFGNGGTDY DFESRDPHKA REELERLQTD QSSLEKRVNK KVTAMFEKAE DEYNALMTKK 1001: NIIETDKSKI KKVIEELDEK KKETLKVTWV KVNQDFGSIF STLLPGTMSK LEPPEGGTFL DGLEVRVAFG DVWKQSLSEL SGGQRSLLAL SLILALLLFK 1101: PAPIYILDEV DAALDLSHTQ NIGRMIKSHF PHSQFIVVSL KEGMFSNADV LFRTKFVDGV STVQRTVTKQ S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)