AT3G47450.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with similarity to the bacterial YqeH GTPase required for proper ribosome assembly. In Arabidopsis, mutant analyses show that this protein regulates growth and hormonal signaling in plants. It also attenuates oxidative stress and reactive oxygen species (ROS). It also seems to be involved in regulating leaf senescence and cell death. This gene product is also involved in nitric oxide biosynthesis in response to ABA but not exogenous H2O2. This protein also appears to be required for proper plastid biogenesis. Levels of several plastid-localized proteins, including RBCL, ClpP1, and the MEP biosynthesis enzymes DXS and DXR are altered in rif1-1 mutants. This protein was originally characterized as a mitrochondrial-localized nitric oxide synthase, but, the synthase activity was later disproven. In addition, new studies with GFP fusion proteins and chloroplast import assays suggest that this protein is found in chloroplasts. | ||||||||||||||||
| Computational Description (TAIR10) |
NO ASSOCIATED 1 (NOA1); FUNCTIONS IN: GTPase activity; INVOLVED IN: in 8 processes; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G57180.1); Has 1573 Blast hits to 1527 proteins in 752 species: Archae - 6; Bacteria - 1199; Metazoa - 147; Fungi - 33; Plants - 109; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
|
||||||||||||||||
| Coordinates (TAIR10) | chr3:-:17483195..17486249 | ||||||||||||||||
| Molecular Weight (calculated) | 61902.80 Da | ||||||||||||||||
| IEP (calculated) | 9.60 | ||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||
| Length | 561 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALRTLSTFP SLPRRHTTTR REPNLTVIYR NPTTSIVCKS IANSEPPVSL SERDGFAAAA PTPGERFLEN QRAHEAQKVV KKEIKKEKKK KKEEIIARKV 101: VDTSVSCCYG CGAPLQTSDV DSPGFVDLVT YELKKKHHQL RTMICGRCQL LSHGHMITAV GGNGGYPGGK QFVSADELRE KLSHLRHEKA LIVKLVDIVD 201: FNGSFLARVR DLVGANPIIL VITKIDLLPK GTDMNCIGDW VVEVTMRKKL NVLSVHLTSS KSLDGVSGVA SEIQKEKKGR DVYILGAANV GKSAFINALL 301: KTMAERDPVA AAAQKYKPIQ SAVPGTTLGP IQINAFVGGE KLYDTPGVHL HHRQAAVVHS DDLPALAPQN RLRGQSFDIS TLPTQSSSSP KGESLNGYTF 401: FWGGLVRIDI LKALPETCFT FYGPKALEIH AVPTKTATAF YEAKLGVLLT PPSGKNQMQE WKGLQSHRLL QIEINDAKRP ASDVAISGLG WISIEPIRKT 501: RGTEPRDLNE AEHEIHICVS VPKPVEVFLR PTLPIGTSGT EWYQYRELTD KEEEVRPKWY F |
||||||||||||||||
| See Also |
|
||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)