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AT3G47440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24492334 (2014): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : tonoplast intrinsic protein 5;1
Curator
Summary (TAIR10)
Encodes AtTIP5;1, functions as water and urea channels in pollen.
Computational
Description (TAIR10)
tonoplast intrinsic protein 5;1 (TIP5;1); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: transport, urea transport; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: delta tonoplast integral protein (TAIR:AT3G16240.1); Has 9883 Blast hits to 9870 proteins in 2054 species: Archae - 82; Bacteria - 4603; Metazoa - 1430; Fungi - 328; Plants - 2424; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink).
Protein Annotations
BioGrid:9218eggNOG:COG0580eggNOG:KOG0223EMBL:AL096860
EMBL:BX826124EMBL:CP002686EnsemblPlants:AT3G47440EnsemblPlants:AT3G47440.1
entrez:823898Gene3D:1.20.1080.10GeneID:823898Genevisible:Q9STX9
GO:GO:0005739GO:GO:0006833GO:GO:0009705GO:GO:0015204
GO:GO:0015250GO:GO:0015254GO:GO:0015793GO:GO:0015840
GO:GO:0016021GO:GO:0034220GO:GO:0042807GO:GO:0048235
GO:GO:0071918GO:GO:0090406Gramene:AT3G47440.1hmmpanther:PTHR19139
hmmpanther:PTHR19139:SF54HOGENOM:HOG000288286InParanoid:Q9STX9InterPro:IPR000425
InterPro:IPR022357InterPro:IPR023271KEGG:ath:AT3G47440KO:K09873
OMA:CHGNVETPANTHER:PTHR19139PaxDb:Q9STX9Pfam:PF00230
Pfam:Q9STX9PhylomeDB:Q9STX9PIR:T12999PRIDE:Q9STX9
PRINTS:PR00783PRO:PR:Q9STX9PROSITE:PS00221ProteinModelPortal:Q9STX9
Proteomes:UP000006548Reactome:R-ATH-1237044Reactome:R-ATH-1247673Reactome:R-ATH-432040
Reactome:R-ATH-432047RefSeq:NP_190328.1scanprosite:PS00221SMR:Q9STX9
STRING:3702.AT3G47440.1SUPFAM:SSF81338TAIR:AT3G47440tair10-symbols:TIP5;1
TCDB:1.A.8.10.7TMHMM:TMhelixUniGene:At.43334UniGene:At.68441
UniProt:Q9STX9
Coordinates (TAIR10) chr3:+:17482054..17482987
Molecular Weight (calculated) 26644.70 Da
IEP (calculated) 8.45
GRAVY (calculated) 0.75
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRMIPTSFS SKFQGVLSMN ALRCYVSEFI STFFFVLAAV GSVMSSRKLM AGDVSGPFGV LIPAIANALA LSSSVYISWN VSGGHVNPAV TFAMAVAGRI
101: SVPTAMFYWT SQMIASVMAC LVLKVTVMEQ HVPIYKIAGE MTGFGASVLE GVLAFVLVYT VFTASDPRRG LPLAVGPIFI GFVAGANVLA AGPFSGGSMN
201: PACAFGSAMV YGSFKNQAVY WVGPLLGGAT AALVYDNVVV PVEDDRGSST GDAIGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)