suba logo
AT3G47370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23323832 (2013): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S10p/S20e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 7480 Blast hits to 7480 proteins in 2601 species: Archae - 270; Bacteria - 4741; Metazoa - 380; Fungi - 140; Plants - 182; Viruses - 0; Other Eukaryotes - 1767 (source: NCBI BLink).
Protein Annotations
BioGrid:9211eggNOG:COG0051eggNOG:KOG0900EMBL:AK227448
EMBL:AK227766EMBL:AL096860EMBL:AY088633EMBL:BT003067
EMBL:CP002686EnsemblPlants:AT3G47370EnsemblPlants:AT3G47370.1EnsemblPlants:AT3G47370.2
EnsemblPlants:AT3G47370.3entrez:823891Gene3D:3.30.70.600GeneID:823891
Genevisible:Q9STY6GO:GO:0003723GO:GO:0003735GO:GO:0005618
GO:GO:0005730GO:GO:0005829GO:GO:0006412GO:GO:0009506
GO:GO:0016020GO:GO:0022626GO:GO:0022627Gramene:AT3G47370.1
Gramene:AT3G47370.2Gramene:AT3G47370.3HAMAP:MF_00508hmmpanther:PTHR11700
hmmpanther:PTHR11700:SF10HOGENOM:HOG000270245InParanoid:Q9STY6InterPro:IPR001848
InterPro:IPR005729InterPro:IPR018268InterPro:IPR027486KEGG:ath:AT3G47370
KO:K02969OMA:YELKIHKPANTHER:PTHR11700PaxDb:Q9STY6
Pfam:PF00338Pfam:Q9STY6PhylomeDB:Q9STY6PIR:T12992
PRIDE:Q9STY6PRINTS:PR00971PRO:PR:Q9STY6PROSITE:PS00361
ProteinModelPortal:Q9STY6Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_001030826.1RefSeq:NP_190321.1
RefSeq:NP_850665.1scanprosite:PS00361SMART:SM01403SMR:Q9STY6
STRING:3702.AT3G47370.1SUPFAM:SSF54999TAIR:AT3G47370TIGRfam:TIGR01046
TIGRFAMs:TIGR01046UniGene:At.35815UniProt:Q9STY6
Coordinates (TAIR10) chr3:-:17453671..17454437
Molecular Weight (calculated) 13693.90 Da
IEP (calculated) 10.44
GRAVY (calculated) -0.37
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYEPMKPTK AGLEAPLEQI HKIRITLSSK NVKNLEKVCT DLVRGAKDKR LRVKGPVRMP TKVLKITTRK APCGEGTNTW DRFELRVHKR VIDLFSSPDV
101: VKQITSITIE PGVEVEVTIA DS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)