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AT3G47250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.746
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF247)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G47200.2); Has 1106 Blast hits to 1004 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AK226358EMBL:AL133292EMBL:AY065203EMBL:AY096508
EMBL:CP002686EnsemblPlants:AT3G47250EnsemblPlants:AT3G47250.1EnsemblPlants:AT3G47250.2
EnsemblPlants:AT3G47250.3entrez:823878GeneID:823878GO:GO:0016021
Gramene:AT3G47250.1Gramene:AT3G47250.2Gramene:AT3G47250.3hmmpanther:PTHR31549
hmmpanther:PTHR31549:SF3InterPro:IPR004158KEGG:ath:AT3G47250Pfam:PF03140
PhylomeDB:Q9SD48PIR:T45661Proteomes:UP000006548RefSeq:NP_190309.1
RefSeq:NP_850661.1RefSeq:NP_850662.1STRING:3702.AT3G47250.1TAIR:AT3G47250
TMHMM:TMhelixUniGene:At.23847UniProt:Q9SD48
Coordinates (TAIR10) chr3:-:17400124..17401566
Molecular Weight (calculated) 54809.00 Da
IEP (calculated) 8.34
GRAVY (calculated) -0.18
Length 480 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDETRSTSS LSDIAISIID EGPLSPLRQR SERSVVSHIK RNLQSSGKPL ILLESAGKAS CCIFRIPDSL AEVNPKAYKP KVVSIGPYHY GENHLQMIQQ
101: HKFRFLELFV DRATKKGMDE NVLYAAVGAL QHKIRASYSE ELRIEKSELV SMMILDGCFI LMLLLIVSRK IDLDMNKDPI FTIPWILASI QSDLLLLENQ
201: VPFFVLRTIF DKSGIGSPGD LNRMAFSFFN LSIDKPDTYW AKHRDRGAKH LLDLNRKTFI PSMRSMGESE TTPSSKFQHS KGKSGEVSSS ESTFPLILSA
301: KRLRLQGIKF RLRSDAESIL DIKLKKNKLQ IPLLRLDGFI SSIFLNCVAF EQFYTESTND ITSYVVFMGC LLNDQEDATF LNNDKRIIEN YFGNENEVSQ
401: FFKTICKDVV FDTRRSYLRN VFEGVNEYTS KTYNGVWAGF RHTHFESPWT ALSSFAVVFV ILLTMTQAAY AIRSYYHDTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)