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AT3G47160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.975
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G58787.1); Has 1132 Blast hits to 1132 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 45; Plants - 326; Viruses - 118; Other Eukaryotes - 178 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRM0eggNOG:KOG1039EMBL:AL133292EMBL:AY099618EMBL:BT002136EMBL:CP002686EMBL:DQ086845
EnsemblPlants:AT3G47160EnsemblPlants:AT3G47160.1entrez:823869ExpressionAtlas:Q9SD57Gene3D:3.30.40.10GeneID:823869GO:GO:0008270
Gramene:AT3G47160.1hmmpanther:PTHR15315hmmpanther:PTHR15315:SF28InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907Pfam:PF13920
Pfscan:PS50089PhylomeDB:Q9SD57PIR:T45652PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_190300.1
scanprosite:PS00518SMART:SM00184SMR:Q9SD57STRING:3702.AT3G47160.2SUPFAM:SSF57850TAIR:AT3G47160UniGene:At.43855
UniProt:Q9SD57
Coordinates (TAIR10) chr3:-:17360238..17361879
Molecular Weight (calculated) 28525.60 Da
IEP (calculated) 7.31
GRAVY (calculated) -0.35
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKVSFKDSL KALEADIQHA NTVALDYPRE KDGARVQMRL SYTPAAQFLL FLVQWTDCHL AGTLGLLRVL IYMTYADGKT TMSVYERKTS IKDFYAVIFP
101: SLLQLERGIT DLDDRKQKEV CKIRYRNKDE TEKVKLSEID IEREEECGIC MEMNNMVVLP NCTHSLCIKC YRDWHGRSES CPFCRDSLKR VNSGDLWMLM
201: EKSDTVNMYT IERENKKRLF VYIEKLPLVV PDQVFASSPY DCHVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)