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AT3G47120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA recognition motif (RRM)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 201898 Blast hits to 124021 proteins in 4668 species: Archae - 159; Bacteria - 19385; Metazoa - 64482; Fungi - 8819; Plants - 85595; Viruses - 264; Other Eukaryotes - 23194 (source: NCBI BLink).
Protein Annotations
BioGrid:9185eggNOG:ENOG4111KW0eggNOG:KOG0126EMBL:AL133292EMBL:BT002472EMBL:BT010369EMBL:CP002686
EnsemblPlants:AT3G47120EnsemblPlants:AT3G47120.1entrez:823865Gene3D:3.30.70.330Gene3D:4.10.1000.10GeneID:823865Genevisible:Q9SD61
GO:GO:0000166GO:GO:0003677GO:GO:0003723GO:GO:0046872Gramene:AT3G47120.1hmmpanther:PTHR23139HOGENOM:HOG000174091
InParanoid:Q9SD61IntAct:Q9SD61InterPro:IPR000504InterPro:IPR000571InterPro:IPR012677KEGG:ath:AT3G47120KO:K13107
ncoils:CoilOMA:GHEEDRSPaxDb:Q9SD61Pfam:PF00076Pfam:PF00642Pfam:Q9SD61Pfscan:PS50102
Pfscan:PS50103PhylomeDB:Q9SD61PIR:T45648PRIDE:Q9SD61PRO:PR:Q9SD61PROSITE:PS50102PROSITE:PS50103
ProteinModelPortal:Q9SD61Proteomes:UP000006548RefSeq:NP_190296.1SMART:SM00356SMART:SM00360SMR:Q9SD61STRING:3702.AT3G47120.1
SUPFAM:SSF54928SUPFAM:SSF90229TAIR:AT3G47120UniGene:At.35841UniProt:Q9SD61
Coordinates (TAIR10) chr3:-:17351334..17352769
Molecular Weight (calculated) 40686.50 Da
IEP (calculated) 8.45
GRAVY (calculated) -1.46
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)