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AT3G47050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.954
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: sperm cell, pollen tube; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT3G47010.1); Has 10572 Blast hits to 9756 proteins in 1589 species: Archae - 69; Bacteria - 6515; Metazoa - 14; Fungi - 1565; Plants - 482; Viruses - 0; Other Eukaryotes - 1927 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G47050-MONOMERCAZy:GH3eggNOG:COG1472eggNOG:ENOG410IHID
EMBL:AL133292EMBL:CP002686EnsemblPlants:AT3G47050EnsemblPlants:AT3G47050.1
entrez:823858ExpressionAtlas:Q9SD68Gene3D:3.20.20.300Gene3D:3.40.50.1700
GeneID:823858GO:GO:0004553GO:GO:0005773GO:GO:0005975
Gramene:AT3G47050.1hmmpanther:PTHR30620hmmpanther:PTHR30620:SF33HOGENOM:HOG000031214
InterPro:IPR001764InterPro:IPR002772InterPro:IPR017853InterPro:IPR026892
OMA:NTILRYEPANTHER:PTHR30620Pfam:PF00933Pfam:PF01915
PhylomeDB:Q9SD68PIR:T45641PRINTS:PR00133Proteomes:UP000006548
RefSeq:NP_190289.1SMR:Q9SD68STRING:3702.AT3G47050.1SUPFAM:0046644
SUPFAM:SSF51445SUPFAM:SSF52279TAIR:AT3G47050UniGene:At.35850
UniProt:Q9SD68
Coordinates (TAIR10) chr3:-:17328092..17330857
Molecular Weight (calculated) 67255.20 Da
IEP (calculated) 5.08
GRAVY (calculated) -0.14
Length 612 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDNEKSYVY KNREAPVEAR VKDLLSRMTL AEKIGQMTLI ERSVASEAVI RDFSIGSVLN RAGGWPFEDA KSSNWADMID GFQRSALESR LGIPIIYGID
101: AVHGNNDVYG ATIFPHNIGL GATRDADLVK RIGAATALEV RACGAHWAFA PCVAVVKDPR WGRCYESYGE VAQIVSEMTS LVSGLQGEPS KDHTNGYPFL
201: AGRKNVVACA KHFVGDGGTN KAINEGNTIL RYEDLERKHI APYKKCISQG VSTVMASYSS WNGDKLHSHY FLLTEILKQK LGFKGYVVSD WEGLDRLSDP
301: PGSNYRNCVK IGINAGIDMV MVPFKYEQFR NDLIDLVESG EVSMARVNDA VERILRVKFV AGLFEFPLTD RSLLPTVGCK EHRELAREAV RKSLVLLKNG
401: RYGEFLPLNC NAERILVVGT HADDLGYQCG GWTKTMYGQS GRITDGTTLL DAIKAAVGDE TEVIYEKSPS EETLASGYRF SYAIVAVGES PYAETMGDNS
501: ELVIPFNGSE IITTVAEKIP TLVILFSGRP MFLEPQVLEK AEALVAAWLP GTEGQGIADV IFGDYDFRGK LPATWFKRVD QLPLDIESNG YLPLFPLGFG
601: LNGDSVENSD TV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)