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AT3G46810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.616
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G46800.1); Has 1825 Blast hits to 696 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 1753; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J8VYeggNOG:ENOG41119PWEMBL:AL096859EMBL:CP002686EnsemblPlants:AT3G46810EnsemblPlants:AT3G46810.1entrez:823834
GeneID:823834GO:GO:0005622GO:GO:0008270GO:GO:0035556GO:GO:0047134Gramene:AT3G46810.1hmmpanther:PTHR32410
hmmpanther:PTHR32410:SF152InterPro:IPR001965InterPro:IPR002219InterPro:IPR004146InterPro:IPR011424KEGG:ath:AT3G46810OMA:DICHITR
Pfam:PF03107Pfam:PF07649PhylomeDB:Q9STF5PIR:T12967Proteomes:UP000006548RefSeq:NP_190265.1SMART:SM00109
SMART:SM00249SMR:Q9STF5STRING:3702.AT3G46810.1SUPFAM:SSF57889TAIR:AT3G46810UniGene:At.35882UniProt:Q9STF5
Coordinates (TAIR10) chr3:-:17238472..17240532
Molecular Weight (calculated) 78933.70 Da
IEP (calculated) 7.47
GRAVY (calculated) -0.31
Length 686 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKVVLRVHD HPLLPFERFY FGRCSGCSRE GYFYGGYRCN ELACFAVFHK ECAESKPEIS HHAHPKHLLK LGNRRQRCHL CERPVGIGYF CSICDFGMHL
101: VCAKSPPLSL QPQLSSIENY KVHEHPLKPF KTAWLAETGN CKGCNYIIGN GDSAPFYECR RCKLYIHVTC LELFFTTDAR HNSHLKHPLK YLKNGPPSYA
201: DHKCLLCGRE FEDQQGQKYE LYHCDVCNFS ICISCQGNPP PLVVVTPKTH EHQLHLIPRL LDFTCNACGT QGDRSPYFCL QCNFMIHRGC IDLPRIININ
301: RHDHRISYIC HLGQGNLKCG VCRKTVDGFY GAYSCSKCSS YVVHSLCATR KDVWDMVELE GTPEEEEIAP FEVVDENTIK HMSHDHDLIF NNDGINLHES
401: KLCEACVSQI NTDPFYSCEL CGFILHQTCA NMPRKKRHVL CNIPFSLQTD DSKDSSRLRR KCSLCLQHFT GFAYNLHIAY NSRTEVMDIR CGSIFEPFVH
501: ERHPHPLYYK FFTFSAVAKC DICHITRRHL LCCEECDFRL DFRCATLPKK VMKQRYDDHP LFLSYGENNV DGEYWCDVCE KRVDAKTWFY TCDACGVTLH
601: VSCVVGDFSY HMPGPLSTVV SEYKMVPPAV VSLYKVVPNT SICRPLCSRC HTRCKLPCIL ETSEDGVNVY FCSNDCHKNP WESSYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)