AT3G46800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.962 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G46810.1); Has 2034 Blast hits to 746 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 11; Plants - 1925; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17234494..17236542 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77888.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||
| Length | 682 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKVELPVHE HPLFIFDRIC MDTCKGCSVF GYFYGGYVCN EVGCDTLFHK ECVESVPEIK HPSHPQHPLK LNLKCGRFCC SLCISGLQVG YHCSICDFNV 101: HLVCARRPPS STSSSSSSSP LPTSVDNSKV HQHPLLLSKN VETFLLKEGR NCNMCNTNIK INEKQLCECR LCNILFHLDC VGLIPNVYQT SHPKHPLKFL 201: QYGAPEYAHE KCLLCKKKFK KLSNNYDRVY HCDVCNVTIC KDYCMAKPPP VSVVSPTTHE HQLHLVPRLV NFTCNACGTA GDRSPYFCLQ CNFMIHRACI 301: DLPRVININR HNHRISYTSL LGHGNWTCGV CRKKVDGFYG AYSCSKCPSY AVHARCATRK DVWYKVELEG TPEEEEIAPF EVVDENLIKH FIHGHNLRLN 401: KDGNHESKFC EACASKINND PFYGCEQCDF ILHETCASLP RKIRHVSNNK PLILSTDTYL KDSPRQRRHC SACFQNFSGF RYETQSRNLF GSATLDVRCS 501: SIYEPFLHES HPHPLYFSLE GDTKCSACDI TYSARDMLCC DECEFRLDFR CATLPRKVMN QRYDDHPLYL SYGENKEDGQ LWCEVCETKV DPKEWLYTCN 601: LCGIILHISC VVGDFSYHVP GHISSNKIAN GVVVPNTSIC RPHCSRCSSR CKLPYILQIN DFYFCSNKCC GNTRNPRGRN YY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)