AT3G46790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB, which is essential for ndhB translation. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CHLORORESPIRATORY REDUCTION 2 (CRR2); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 36401 Blast hits to 13536 proteins in 261 species: Archae - 0; Bacteria - 8; Metazoa - 92; Fungi - 72; Plants - 35786; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17231975..17233948 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74344.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.01 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 657 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFLSHPPQVI QPTYHTVNFL PRSPLKPPSC SVALNNPSIS SGAGAKISNN QLIQSLCKEG KLKQAIRVLS QESSPSQQTY ELLILCCGHR SSLSDALRVH 101: RHILDNGSDQ DPFLATKLIG MYSDLGSVDY ARKVFDKTRK RTIYVWNALF RALTLAGHGE EVLGLYWKMN RIGVESDRFT YTYVLKACVA SECTVNHLMK 201: GKEIHAHLTR RGYSSHVYIM TTLVDMYARF GCVDYASYVF GGMPVRNVVS WSAMIACYAK NGKAFEALRT FREMMRETKD SSPNSVTMVS VLQACASLAA 301: LEQGKLIHGY ILRRGLDSIL PVISALVTMY GRCGKLEVGQ RVFDRMHDRD VVSWNSLISS YGVHGYGKKA IQIFEEMLAN GASPTPVTFV SVLGACSHEG 401: LVEEGKRLFE TMWRDHGIKP QIEHYACMVD LLGRANRLDE AAKMVQDMRT EPGPKVWGSL LGSCRIHGNV ELAERASRRL FALEPKNAGN YVLLADIYAE 501: AQMWDEVKRV KKLLEHRGLQ KLPGRCWMEV RRKMYSFVSV DEFNPLMEQI HAFLVKLAED MKEKGYIPQT KGVLYELETE EKERIVLGHS EKLALAFGLI 601: NTSKGEPIRI TKNLRLCEDC HLFTKFISKF MEKEILVRDV NRFHRFKNGV CSCGDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)