suba logo
AT3G46580.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : methyl-CPG-binding domain protein 5
Curator
Summary (TAIR10)
Protein containing a putative methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational
Description (TAIR10)
methyl-CPG-binding domain protein 5 (MBD5); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: perinucleolar chromocenter; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 6 (TAIR:AT5G59380.1); Has 120 Blast hits to 118 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 4; Plants - 49; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
BioGrid:9131eggNOG:ENOG4111HPQeggNOG:KOG4161EMBL:AL133314EMBL:AY063849EMBL:AY086606EMBL:AY142653
EMBL:CP002686EnsemblPlants:AT3G46580EnsemblPlants:AT3G46580.1entrez:823811Gene3D:3.30.890.10GeneID:823811Genevisible:Q9SNC0
GO:GO:0000122GO:GO:0005634GO:GO:0005720GO:GO:0006346GO:GO:0006351GO:GO:0008327GO:GO:0010370
GO:GO:0019899GO:GO:0043621Gramene:AT3G46580.1hmmpanther:PTHR12396hmmpanther:PTHR12396:SF11HOGENOM:HOG000029094InParanoid:Q9SNC0
InterPro:IPR001739InterPro:IPR016177iPTMnet:Q9SNC0KEGG:ath:AT3G46580OMA:IGDYKIQPaxDb:Q9SNC0Pfam:PF01429
Pfam:Q9SNC0Pfscan:PS50982PhylomeDB:Q9SNC0PIR:T45595PRIDE:Q9SNC0PRO:PR:Q9SNC0PROSITE:PS50982
ProteinModelPortal:Q9SNC0Proteomes:UP000006548RefSeq:NP_190242.1SMR:Q9SNC0STRING:3702.AT3G46580.1SUPFAM:SSF54171TAIR:AT3G46580
tair10-symbols:ATMBD5tair10-symbols:MBD05tair10-symbols:MBD5UniGene:At.27178UniProt:Q9SNC0
Coordinates (TAIR10) chr3:+:17148397..17149328
Molecular Weight (calculated) 20558.80 Da
IEP (calculated) 9.77
GRAVY (calculated) -1.09
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNGTDQAQP PPENPATPVD SKSRKRATPG DDNWLPPDWR TEIRVRTSGT KAGTVDKFYY EPITGRKFRS KNEVLYYLEH GTPKKKSVKT AENGDSHSEH
101: SEGRGSARRQ TKSNKKVTEP PPKPLNFDFL NVPEKVTWTG INGSEEAWLP FIGDYKIQES VSQDWDRVFT LVTSQNAGKT MF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)