AT3G46540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.793 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ENTH/VHS family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ENTH/VHS family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT1G08670.1); Has 992 Blast hits to 992 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 538; Fungi - 205; Plants - 176; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17134204..17135411 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34767.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.68 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||
| Length | 307 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMMSRTRSS IAMGTPSFLE LKKQASFFFK EKLKTARLAL TDVTPLQLMT EEATDGESCG PNTQTLGSIS KAAFEFEDYL AIVEVLHKRL AKFDKRNWRM 101: AYNSLIVVEH LLTHGPESVS DEFQGDIDVI SQMQTFQQID EKGFNWGLAV RKKAEKVLKL LEKGELLKEE RKRARELSRG IQGFGSFNHK SSSHSLSEHE 201: VLQESTVYRK CNSNFTKNYD EDDQENTMVS PNDANLFPQP LVADPSEESR TGMKENMDPE DDENTEVNPL LGFSKKEGQE LAGEDENHPF TDGESKHTVV 301: LLDENTD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)