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AT3G46540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.503
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/VHS family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/VHS family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT1G08670.1); Has 992 Blast hits to 992 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 538; Fungi - 205; Plants - 176; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSM0eggNOG:KOG2056EMBL:AL133314EMBL:AY062862EMBL:AY128750EMBL:CP002686EnsemblPlants:AT3G46540
EnsemblPlants:AT3G46540.1entrez:823807Gene3D:1.25.40.90GeneID:823807Gramene:AT3G46540.1hmmpanther:PTHR12276hmmpanther:PTHR12276:SF10
InterPro:IPR008942InterPro:IPR013809KEGG:ath:AT3G46540OMA:WRMAYNSPfam:PF01417Pfscan:PS50942PhylomeDB:Q9SNC4
PIR:T45591PROSITE:PS50942Proteomes:UP000006548RefSeq:NP_190238.1SMART:SM00273SMR:Q9SNC4STRING:3702.AT3G46540.1
SUPFAM:SSF48464TAIR:AT3G46540UniGene:At.590UniGene:At.67130UniProt:Q9SNC4
Coordinates (TAIR10) chr3:-:17134204..17135411
Molecular Weight (calculated) 34767.70 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.73
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMMSRTRSS IAMGTPSFLE LKKQASFFFK EKLKTARLAL TDVTPLQLMT EEATDGESCG PNTQTLGSIS KAAFEFEDYL AIVEVLHKRL AKFDKRNWRM
101: AYNSLIVVEH LLTHGPESVS DEFQGDIDVI SQMQTFQQID EKGFNWGLAV RKKAEKVLKL LEKGELLKEE RKRARELSRG IQGFGSFNHK SSSHSLSEHE
201: VLQESTVYRK CNSNFTKNYD EDDQENTMVS PNDANLFPQP LVADPSEESR TGMKENMDPE DDENTEVNPL LGFSKKEGQE LAGEDENHPF TDGESKHTVV
301: LLDENTD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)