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AT3G46520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : actin-12
Curator
Summary (TAIR10)
Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development.
Computational
Description (TAIR10)
actin-12 (ACT12); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: cytoskeleton organization; LOCATED IN: mitochondrion, cytoskeleton; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 4 (TAIR:AT5G59370.2); Has 15176 Blast hits to 14784 proteins in 3040 species: Archae - 8; Bacteria - 8; Metazoa - 5711; Fungi - 5220; Plants - 1602; Viruses - 2; Other Eukaryotes - 2625 (source: NCBI BLink).
Protein Annotations
BioGrid:9125eggNOG:COG5277eggNOG:KOG0676EMBL:AL133314EMBL:BT003847EMBL:BT005073EMBL:CP002686
EMBL:U27982EnsemblPlants:AT3G46520EnsemblPlants:AT3G46520.1entrez:823805GeneID:823805Genevisible:P53497GO:GO:0005200
GO:GO:0005524GO:GO:0005739GO:GO:0005856GO:GO:0009570GO:GO:0009941Gramene:AT3G46520.1hmmpanther:PTHR11937
hmmpanther:PTHR11937:SF255HOGENOM:HOG000233339InParanoid:P53497IntAct:P53497InterPro:IPR004000InterPro:IPR004001InterPro:IPR020902
KEGG:ath:AT3G46520KO:K10355OMA:IMVGMEEPANTHER:PTHR11937PaxDb:P53497Pfam:P53497Pfam:PF00022
PhylomeDB:P53497PIR:S68110PRIDE:P53497PRINTS:PR00190PRO:PR:P53497PROSITE:PS00406PROSITE:PS00432
PROSITE:PS01132ProteinModelPortal:P53497Proteomes:UP000006548RefSeq:NP_190236.1scanprosite:PS00406scanprosite:PS00432scanprosite:PS01132
SMART:SM00268SMR:P53497STRING:3702.AT3G46520.1SUPFAM:SSF53067TAIR:AT3G46520tair10-symbols:ACT12UniGene:At.35913
UniProt:P53497
Coordinates (TAIR10) chr3:+:17128567..17129981
Molecular Weight (calculated) 41797.20 Da
IEP (calculated) 5.29
GRAVY (calculated) -0.22
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDMKEKLSY IALDYEQELE TSKTSSSVEK SFELPDGQVI TIGAERFRCP EVLFQPSMIG MENPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFGG IGDRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)