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AT3G46510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant U-box 13
Curator
Summary (TAIR10)
Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29.
Computational
Description (TAIR10)
plant U-box 13 (PUB13); CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PLANT U-BOX 12 (TAIR:AT2G28830.1); Has 8308 Blast hits to 5676 proteins in 314 species: Archae - 6; Bacteria - 52; Metazoa - 2498; Fungi - 809; Plants - 4013; Viruses - 3; Other Eukaryotes - 927 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1580-MONOMERBioGrid:9124EC:6.3.2.-eggNOG:ENOG410ITMMeggNOG:ENOG4110352EMBL:AL133314EMBL:AY042791
EMBL:AY128813EMBL:CP002686EnsemblPlants:AT3G46510EnsemblPlants:AT3G46510.1entrez:823804Gene3D:1.25.10.10Gene3D:3.30.40.10
GeneID:823804Genevisible:Q9SNC6GO:GO:0004842GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0016567
GO:GO:0016874GO:GO:0042742GO:GO:0043066GO:GO:0070696GO:GO:2000028Gramene:AT3G46510.1hmmpanther:PTHR23315
hmmpanther:PTHR23315:SF69HOGENOM:HOG000238412InParanoid:Q9SNC6InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
InterPro:IPR016024iPTMnet:Q9SNC6KEGG:ath:AT3G46510OMA:CIEKWIEPaxDb:Q9SNC6Pfam:PF00514Pfam:PF04564
Pfam:Q9SNC6Pfscan:PS50176Pfscan:PS51698PhylomeDB:Q9SNC6PIR:T45588PRIDE:Q9SNC6PRO:PR:Q9SNC6
PROSITE:PS50176PROSITE:PS51698ProteinModelPortal:Q9SNC6Proteomes:UP000006548RefSeq:NP_190235.1SMART:SM00185SMART:SM00504
SMR:Q9SNC6STRING:3702.AT3G46510.1SUPFAM:SSF48371SUPFAM:SSF57850TAIR:AT3G46510tair10-symbols:ATPUB13tair10-symbols:PUB13
UniGene:At.23070UniPathway:UPA00143UniProt:Q9SNC6
Coordinates (TAIR10) chr3:-:17124106..17126539
Molecular Weight (calculated) 71970.10 Da
IEP (calculated) 4.73
GRAVY (calculated) -0.25
Length 660 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)