AT3G46450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14-like 3 (TAIR:AT2G21540.2); Has 1063 Blast hits to 1063 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 333; Plants - 448; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17093297..17095319 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55389.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.48 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||
| Length | 486 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDNSGRSRN SMMATVSSGK ELLPKRSLVA AIPRAVQQTI SKHVSFGSNG RFGSGTARNA AVFLLKIAVL EVVRRVSKAK CPHLWNSLQA LQCLCYPPLK 101: WIQRWAPFKE LINAMQMLSR PLLVITIAEA LTDQSELKQE ASGGTNSHAS SESESQSDSQ TLQSPSDIRI EDEAPLPVIS QDWLRKLYEE LEKQRLSLPE 201: RLNEDELHRF YRVSNGDFTS LLSSIKKTIH WRETYRILSE EELETWSSLL FWHGYDKNQR PCLIVRLGLA FLKLPSHERP RFAQAIISQV EHGVLHLLTP 301: ENSELTVLVD CEGLSPLRIP MQMMRSCSSI LQDHFPNRLG CLFIIRLPPV VRVISQTFIQ ILRPTTRKKL RIEGETFHRV LSEYLQTLPS YLGSNCNCKR 401: CSNLNEQDPP QPQTHPRRKR RSSSETEKLD DSHWSYNAQT PDLSYEDEPS LNICSQVLRT AVVFLLMIWL FGALLAGFAD PESRPF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)