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AT3G46440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UDP-XYL synthase 5
Curator
Summary (TAIR10)
encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational
Description (TAIR10)
UDP-XYL synthase 5 (UXS5); FUNCTIONS IN: UDP-glucuronate decarboxylase activity, catalytic activity; INVOLVED IN: nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-glucuronic acid decarboxylase 3 (TAIR:AT5G59290.2); Has 43250 Blast hits to 43194 proteins in 3018 species: Archae - 841; Bacteria - 25483; Metazoa - 667; Fungi - 365; Plants - 1392; Viruses - 87; Other Eukaryotes - 14415 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G46440-MONOMERBioCyc:ARA:GQT-2608-MONOMERBioGrid:9114EC:4.1.1.35eggNOG:COG0451eggNOG:KOG1429EMBL:AK228600
EMBL:AK317497EMBL:AL133298EMBL:AY072098EMBL:AY087118EMBL:AY096586EMBL:CP002686EnsemblPlants:AT3G46440
EnsemblPlants:AT3G46440.1EnsemblPlants:AT3G46440.2entrez:823794Gene3D:3.40.50.720GeneID:823794Genevisible:Q9SN95GO:GO:0005829
GO:GO:0033320GO:GO:0042732GO:GO:0048040Gramene:AT3G46440.1Gramene:AT3G46440.2gramene_pathway:4.1.1.35gramene_pathway:PWY-4821
hmmpanther:PTHR10366hmmpanther:PTHR10366:SF323HOGENOM:HOG000168004InParanoid:Q9SN95InterPro:IPR016040iPTMnet:Q9SN95KEGG:ath:AT3G46440
KO:K08678OMA:MASSDKQPaxDb:Q9SN95Pfam:PF16363Pfam:Q9SN95PhylomeDB:Q9SN95PIR:T45701
PRIDE:Q9SN95PRO:PR:Q9SN95ProteinModelPortal:Q9SN95Proteomes:UP000006548RefSeq:NP_001030820.1RefSeq:NP_190228.1SMR:Q9SN95
STRING:3702.AT3G46440.1SUPFAM:SSF51735TAIR:AT3G46440tair10-symbols:UXS5UniGene:At.43598UniPathway:UPA00796UniProt:Q9SN95
Coordinates (TAIR10) chr3:-:17089268..17091611
Molecular Weight (calculated) 38391.40 Da
IEP (calculated) 7.61
GRAVY (calculated) -0.41
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSDKQTSP KPPPSPSPLR NSKFCQSNMR ILISGGAGFI GSHLVDKLME NEKNEVIVAD NYFTGSKDNL KKWIGHPRFE LIRHDVTEPL LIEVDQIYHL
101: ACPASPIFYK YNPVKTIKTN VIGTLNMLGL AKRVGARILL TSTSEVYGDP LIHPQPESYW GNVNPIGVRS CYDEGKRVAE TLMFDYHRQH GIEIRIARIF
201: NTYGPRMNID DGRVVSNFIA QALRGEALTV QKPGTQTRSF CYVSDMVDGL MRLMEGDDTG PINIGNPGEF TMVELAETVK ELINPSIEIK MVENTPDDPR
301: QRKPDITKAK EVLGWEPKVK LREGLPLMEE DFRLRLGVHK N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)