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AT3G46210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.807
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S5 domain 2-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 6526 Blast hits to 6524 proteins in 2015 species: Archae - 242; Bacteria - 4366; Metazoa - 314; Fungi - 210; Plants - 230; Viruses - 0; Other Eukaryotes - 1164 (source: NCBI BLink).
Protein Annotations
EC:3.1.13.-eggNOG:COG0689eggNOG:KOG1069EMBL:AK228171EMBL:AK317261EMBL:AK317537EMBL:AL355775
EMBL:BT003125EMBL:CP002686EnsemblPlants:AT3G46210EnsemblPlants:AT3G46210.1EnsemblPlants:AT3G46210.2EnsemblPlants:AT3G46210.3EnsemblPlants:AT3G46210.4
EnsemblPlants:AT3G46210.5EnsemblPlants:AT3G46210.6entrez:823766Gene3D:3.30.230.70GeneID:823766GO:GO:0000178GO:GO:0003723
GO:GO:0004527GO:GO:0005730GO:GO:0005840GO:GO:0006364Gramene:AT3G46210.1Gramene:AT3G46210.2Gramene:AT3G46210.3
Gramene:AT3G46210.4Gramene:AT3G46210.5Gramene:AT3G46210.6hmmpanther:PTHR11953hmmpanther:PTHR11953:SF1HOGENOM:HOG000229515IntAct:Q9LX74
InterPro:IPR001247InterPro:IPR015847InterPro:IPR020568InterPro:IPR027408iPTMnet:Q9LX74KEGG:ath:AT3G46210KO:K12590
OMA:ICCCLTEPaxDb:Q9LX74Pfam:PF01138PhylomeDB:Q9LX74PIR:T49262PRO:PR:Q9LX74Proteomes:UP000006548
Reactome:R-ATH-429958Reactome:R-ATH-450604RefSeq:NP_001030817.1RefSeq:NP_001030818.1RefSeq:NP_001030819.1RefSeq:NP_001078250.1RefSeq:NP_001190019.1
RefSeq:NP_190207.1SMR:Q9LX74STRING:3702.AT3G46210.1SUPFAM:SSF54211SUPFAM:SSF55666TAIR:AT3G46210UniGene:At.43331
UniProt:Q9LX74
Coordinates (TAIR10) chr3:-:16976960..16978489
Molecular Weight (calculated) 25811.10 Da
IEP (calculated) 7.05
GRAVY (calculated) -0.06
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIDREDGRT PNQLRPLACS RNILHRPHGS ASWSQGDTKV LAAVYGPKAG TKKNENAEKA CFEVIWKPKS GQIGKVEKEY EMILKRTIQS ICVLTVNPNT
101: TTSVIIQVVH DDGSLLPCAI NAACAALVDA GIPMKHLAVA ICCCLAENGY LVLDPNKLEE KKMTAFAYLV FPNTTLSVLP EGSSVAEGEP VEHGIITSIT
201: HGVMSVDDYF LCVENGRAAT ASLSAFFRKN FQQSSSKAG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)