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AT3G46130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 48
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.
Computational
Description (TAIR10)
myb domain protein 48 (MYB48); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, response to salicylic acid stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 59 (TAIR:AT5G59780.3); Has 8993 Blast hits to 8283 proteins in 477 species: Archae - 0; Bacteria - 0; Metazoa - 750; Fungi - 483; Plants - 5952; Viruses - 3; Other Eukaryotes - 1805 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AF272733EMBL:AK176475
EMBL:AL355775EMBL:AY519594EMBL:CP002686EMBL:DQ075255
EMBL:DQ075256EMBL:DQ075257EnsemblPlants:AT3G46130EnsemblPlants:AT3G46130.1
entrez:823756ExpressionAtlas:Q9LX82Gene3D:1.10.10.60GeneID:823756
Genevisible:Q9LX82GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0009751hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF484HOGENOM:HOG000237600InParanoid:Q9LX82InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT3G46130OMA:HEENERN
PaxDb:Q9LX82Pfam:PF00249Pfam:Q9LX82Pfscan:PS51294
PhylomeDB:Q9LX82PIR:T49254PRIDE:Q9LX82PRO:PR:Q9LX82
PROSITE:PS51294ProteinModelPortal:Q9LX82Proteomes:UP000006548RefSeq:NP_001030816.1
RefSeq:NP_001078249.1RefSeq:NP_190199.1SMART:SM00717SMR:Q9LX82
STRING:3702.AT3G46130.1SUPFAM:SSF46689TAIR:AT3G46130tair10-symbols:ATMYB48
tair10-symbols:ATMYB48-3tair10-symbols:MYB48UniGene:At.1475UniProt:Q9LX82
Coordinates (TAIR10) chr3:+:16945433..16946376
Molecular Weight (calculated) 29655.50 Da
IEP (calculated) 9.16
GRAVY (calculated) -0.93
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MMQEEGNRKG PWTEQEDILL VNFVHLFGDR RWDFIAKVSG LNRTGKSCRL RWVNYLHPGL KRGKMTPQEE RLVLELHAKW GNRWSKIARK LPGRTDNEIK
101: NYWRTHMRKK AQEKKRPVSP TSSFSNCSSS SVTTTTTNTQ DTSCHSRKSS GEVSFYDTGG SRSTREMNQE NEDVYSLDDI WREIDHSAVN IIKPVKDIYS
201: EQSHCLSYPN LASPSWESSL DSIWNMDADK SKISSYFAND QFPFCFQHSR SPWSSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)