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AT3G46100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Histidyl-tRNA synthetase 1
Curator
Summary (TAIR10)
histidyl-tRNA synthetase
Computational
Description (TAIR10)
Histidyl-tRNA synthetase 1 (HRS1); FUNCTIONS IN: histidine-tRNA ligase activity; INVOLVED IN: histidyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidyl-tRNA synthetase, class IIa, subgroup (InterPro:IPR015807), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Anticodon-binding (InterPro:IPR004154), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Histidyl-tRNA synthetase, class IIa (InterPro:IPR004516); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT5G03406.1); Has 12183 Blast hits to 12140 proteins in 2982 species: Archae - 258; Bacteria - 7725; Metazoa - 293; Fungi - 147; Plants - 90; Viruses - 0; Other Eukaryotes - 3670 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G46100-MONOMERBRENDA:6.1.1.21EC:6.1.1.21eggNOG:COG0124
eggNOG:KOG1936EMBL:AF020715EMBL:AL355775EMBL:AY056233
EMBL:AY117252EMBL:CP002686EnsemblPlants:AT3G46100EnsemblPlants:AT3G46100.1
entrez:823753Gene3D:3.40.50.800GeneID:823753Genevisible:O82413
GO:GO:0004821GO:GO:0005524GO:GO:0005739GO:GO:0006427
GO:GO:0009507Gramene:AT3G46100.1gramene_pathway:6.1.1.21gramene_pathway:TRNA-CHARGING-PWY
HAMAP:MF_00127hmmpanther:PTHR11476hmmpanther:PTHR11476:SF5HOGENOM:HOG000018073
InParanoid:O82413InterPro:IPR004154InterPro:IPR004516InterPro:IPR006195
InterPro:IPR015807iPTMnet:O82413KEGG:00970+6.1.1.21KEGG:ath:AT3G46100
KO:K01892OMA:YRQFWQFPANTHER:PTHR11476PaxDb:O82413
Pfam:PF03129Pfam:PF13393Pfscan:PS50862PhylomeDB:O82413
PIR:T49251PIRSF:PIRSF001549PRIDE:O82413PRO:PR:O82413
PROSITE:PS50862ProteinModelPortal:O82413Proteomes:UP000006548RefSeq:NP_190196.1
SMR:O82413STRING:3702.AT3G46100.1SUPFAM:SSF52954SUPFAM:SSF55681
TAIR:AT3G46100tair10-symbols:ATHRS1tair10-symbols:HRS1TIGRfam:TIGR00442
TIGRFAMs:TIGR00442UniGene:At.22106UniProt:O82413
Coordinates (TAIR10) chr3:-:16928444..16930984
Molecular Weight (calculated) 54562.00 Da
IEP (calculated) 7.31
GRAVY (calculated) -0.13
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MRAIHIVTTR LSSSFRPILL LDLVSSCSPP RQFSIPRRLI CAAANGGGRS GSIVAPLVTE EDFHKKIDVN PPKGTRDFPP EDMRLRNWLF NHFKEVSRLY
101: GYEEVDYPVL ETEALFIRKA GEEIRDQLYC FEDRGNRRVA LRPELTPSLA RLVIQKGKSV SLPLKWFAIG QCWRYERMTR GRRREHYQWN MDIIGVPQVT
201: AEAELISSIV TFFKRIGITA SDVGFKVSSR KVLQELLKKY GVPEDLFGRV CIIIDKIEKI PIDEIKKELG FTGISEDAIE QLLQVLSVKS LDDLEDIIGG
301: AGEAIADLKQ LFSLAEKFGY SEWIQFDASV VRGLAYYTGI VFEGFDRKGK LRAICGGGRY DRLLSTYGGD DFPACGFGFG DAVIVELLKE KDLLPELGQE
401: VENIVCALDK DLQGAAATVA TALRDKGQTV DLVLESKPLK WVFKRAARVN ARRLVLVGKT EWEDGSVSVK VLSSGEQFQV KLSDLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)