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AT3G46090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ZAT7; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G46080.1); Has 1028 Blast hits to 997 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 233; Fungi - 0; Plants - 789; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
DNASU:823752eggNOG:COG5048eggNOG:KOG1721EMBL:AB493641EMBL:AL355775EMBL:BT024870EMBL:CP002686
EMBL:X98676EMBL:X98677EnsemblPlants:AT3G46090EnsemblPlants:AT3G46090.1entrez:823752GeneID:823752GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0010200GO:GO:0045926GO:GO:0046872GO:GO:0080134
Gramene:AT3G46090.1hmmpanther:PTHR26374hmmpanther:PTHR26374:SF162HOGENOM:HOG000238452InParanoid:Q42453IntAct:Q42453InterPro:IPR007087
InterPro:IPR015880KEGG:ath:AT3G46090OMA:LGRTISWPaxDb:Q42453Pfam:PF13912Pfam:Q42453Pfscan:PS50157
PhylomeDB:Q42453PIR:T49250PRO:PR:Q42453PROSITE:PS00028PROSITE:PS50157ProteinModelPortal:Q42453Proteomes:UP000006548
RefSeq:NP_190195.1scanprosite:PS00028SMART:SM00355SMR:Q42453STRING:3702.AT3G46090.1SUPFAM:SSF57667TAIR:AT3G46090
tair10-symbols:ZAT7UniGene:At.19763UniProt:Q42453
Coordinates (TAIR10) chr3:-:16926304..16926810
Molecular Weight (calculated) 18360.30 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.26
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MVARSEEIVI VEEDTTAKCL MLLSRVGECG GGCGGDERVF RCKTCLKEFS SFQALGGHRA SHKKLINSDN PSLLGSLSNK KTKTSHPCPI CGVKFPMGQA
101: LGGHMRRHRN EKVSGSLVTR SFLPETTTVT ALKKFSSGKR VACLDLDLDS MESLVNWKLE LGRTISWS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)