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AT3G46060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAB GTPase homolog 8A
Curator
Summary (TAIR10)
small GTP-binding protein (ara-3)
Computational
Description (TAIR10)
RAB GTPase homolog 8A (RAB8A); FUNCTIONS IN: GTP binding; INVOLVED IN: ethylene mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT5G59840.1); Has 29695 Blast hits to 29627 proteins in 805 species: Archae - 22; Bacteria - 171; Metazoa - 15449; Fungi - 4249; Plants - 3560; Viruses - 20; Other Eukaryotes - 6224 (source: NCBI BLink).
Protein Annotations
BioGrid:9069eggNOG:ENOG410XPUIeggNOG:KOG0078EMBL:AL355775EMBL:AY035132EMBL:AY042795EMBL:BT001952
EMBL:BT002186EMBL:CP002686EMBL:D01025EnsemblPlants:AT3G46060EnsemblPlants:AT3G46060.1EnsemblPlants:AT3G46060.2EnsemblPlants:AT3G46060.3
entrez:823749Gene3D:3.40.50.300GeneID:823749Genevisible:P28186GO:GO:0000139GO:GO:0005525GO:GO:0005773
GO:GO:0005774GO:GO:0005886GO:GO:0006904GO:GO:0007264GO:GO:0009306GO:GO:0009873Gramene:AT3G46060.1
Gramene:AT3G46060.2Gramene:AT3G46060.3hmmpanther:PTHR24073hmmpanther:PTHR24073:SF516HOGENOM:HOG000233968InParanoid:P28186IntAct:P28186
InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417iPTMnet:P28186KEGG:ath:AT3G46060KO:K07901OMA:DSFNTTF
PaxDb:P28186Pfam:P28186Pfam:PF00071Pfscan:PS51419PhylomeDB:P28186PIR:JS0640PRIDE:P28186
PRO:PR:P28186PROSITE:PS51419ProteinModelPortal:P28186Proteomes:UP000006548Reactome:R-ATH-1445148Reactome:R-ATH-5620916RefSeq:NP_001078248.1
RefSeq:NP_001118780.1RefSeq:NP_190192.1SMR:P28186STRING:3702.AT3G46060.1SUPFAM:SSF52540TAIR:AT3G46060tair10-symbols:ARA-3
tair10-symbols:ARA3tair10-symbols:ATRAB8Atair10-symbols:ATRABE1Ctair10-symbols:RAB8ATIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.258
UniProt:P28186
Coordinates (TAIR10) chr3:+:16917908..16919740
Molecular Weight (calculated) 23836.30 Da
IEP (calculated) 8.02
GRAVY (calculated) -0.30
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)