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AT3G46000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : actin depolymerizing factor 2
Curator
Summary (TAIR10)
Encodes depolymerizing factor 2.
Computational
Description (TAIR10)
actin depolymerizing factor 2 (ADF2); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 4 (TAIR:AT5G59890.1); Has 1494 Blast hits to 1493 proteins in 266 species: Archae - 0; Bacteria - 8; Metazoa - 650; Fungi - 147; Plants - 513; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41122P5eggNOG:KOG1735EMBL:AF370482EMBL:AF386925EMBL:AL162459EMBL:AY064660EMBL:BT000377
EMBL:CP002686EMBL:U48939EnsemblPlants:AT3G46000EnsemblPlants:AT3G46000.1entrez:823743Gene3D:3.40.20.10GeneID:823743
Genevisible:Q39251GO:GO:0005634GO:GO:0005737GO:GO:0005886GO:GO:0015629GO:GO:0030042Gramene:AT3G46000.1
hmmpanther:PTHR11913hmmpanther:PTHR11913:SF22HOGENOM:HOG000039697InParanoid:Q39251InterPro:IPR002108InterPro:IPR017904InterPro:IPR029006
KEGG:ath:AT3G46000KO:K05765OMA:FEYEIGGPANTHER:PTHR11913PaxDb:Q39251Pfam:PF00241Pfam:Q39251
Pfscan:PS51263PhylomeDB:Q39251PIR:T47540PRIDE:Q39251PRO:PR:Q39251PROSITE:PS51263ProteinModelPortal:Q39251
Proteomes:UP000006548RefSeq:NP_566882.1SMART:SM00102SMR:Q39251STRING:3702.AT3G46000.1SUPFAM:SSF55753TAIR:AT3G46000
tair10-symbols:ADF2UniGene:At.20461UniProt:Q39251
Coordinates (TAIR10) chr3:-:16907743..16908822
Molecular Weight (calculated) 15745.70 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.46
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MANAASGMAV HDDCKLKFME LKAKRTFRTI VYKIEDKQVI VEKLGEPEQS YDDFAASLPA DDCRYCIYDF DFVTAENCQK SKIFFIAWSP DTAKVRDKMI
101: YASSKDRFKR ELDGIQVELQ ATDPTEMGLD VFKSRTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)