suba logo
AT3G45700.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G45710.1); Has 3331 Blast hits to 3241 proteins in 427 species: Archae - 0; Bacteria - 506; Metazoa - 449; Fungi - 129; Plants - 2109; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
BioGrid:9032eggNOG:COG3104eggNOG:KOG1237EMBL:AK117193EMBL:AL157735EMBL:BT005911EMBL:CP002686
EnsemblPlants:AT3G45700EnsemblPlants:AT3G45700.1entrez:823712GeneID:823712Genevisible:Q9M173GO:GO:0005886GO:GO:0006857
GO:GO:0015108GO:GO:0016021GO:GO:0042128GO:GO:1902476Gramene:AT3G45700.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF19
HOGENOM:HOG000237399InParanoid:Q9M173InterPro:IPR000109InterPro:IPR018456InterPro:IPR020846KEGG:ath:AT3G45700PANTHER:PTHR11654
PaxDb:Q9M173Pfam:PF00854Pfam:Q9M173PhylomeDB:Q9M173PIR:T47510PRIDE:Q9M173PRO:PR:Q9M173
PROSITE:PS01022ProteinModelPortal:Q9M173Proteomes:UP000006548Reactome:R-ATH-427975RefSeq:NP_190156.1scanprosite:PS01022SMR:Q9M173
STRING:3702.AT3G45700.1SUPFAM:SSF103473TAIR:AT3G45700TMHMM:TMhelixUniGene:At.35997UniProt:Q9M173
Coordinates (TAIR10) chr3:+:16778765..16781068
Molecular Weight (calculated) 60831.70 Da
IEP (calculated) 9.44
GRAVY (calculated) 0.34
Length 548 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSDSGDKE AHRSSKHGGW ITLPFMLVTL LGMSITYFGW VMNLIVFLIE EFNIKSIAAV QISNIVNGVV NMLPVVAAIL ADSFFGNIPV ISASAFISLT
101: GISLLTLIAS LDYLRPRPCE TGSILCQSPS KLQLGILYAA LALVITGTAG TRFILASAGA NQYKKPKEQG RFFNWYFFTL YGGAITGTTA IVYAQDNASW
201: KLGFGLCVAA NLISFIIFVA GKRLYEHDQP LGSPYTSLVR VLVAATMKRK AVISYKDEDY HHRELEKETK TYVAMPSKSF RFLNRAALKT EGDSNNNMWR
301: LCSVQEVEDF KAVLRLVPLW TSVMFLSAPL AVQMSMTVLQ AMVMDRKLGP HFKVSAGSMQ VIALVSGCVF IILNNWTTYP MYQKLIRKPL TPLQKVGIGH
401: VLTILSMAIS AVVEAKRLKT VENSHLMSVL WLVPALVING IGEAFHFPAN IAIFYGEFPE SLRNTATSLT SVVMGISFYL STALIDVIQR TTKWLPNDIN
501: HGRVDNVYLV LVIIGVSNFG YFLVCSWFYK YRNLKNDDHE QDLKDVTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)