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AT3G45680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.734
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G45710.1); Has 3869 Blast hits to 3768 proteins in 536 species: Archae - 0; Bacteria - 851; Metazoa - 459; Fungi - 223; Plants - 2137; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:AK117660EMBL:AL157735EMBL:CP002686EnsemblPlants:AT3G45680EnsemblPlants:AT3G45680.1
entrez:823710GeneID:823710Genevisible:Q9M175GO:GO:0005886GO:GO:0006857GO:GO:0009624GO:GO:0015112
GO:GO:0015706GO:GO:0016021GO:GO:0042128GO:GO:0071472Gramene:AT3G45680.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF19
HOGENOM:HOG000237399InParanoid:Q9M175InterPro:IPR000109InterPro:IPR018456InterPro:IPR020846KEGG:ath:AT3G45680OMA:AMWLVLP
PANTHER:PTHR11654PaxDb:Q9M175Pfam:PF00854Pfam:Q9M175PhylomeDB:Q9M175PIR:T47508PRIDE:Q9M175
PRO:PR:Q9M175PROSITE:PS01022ProteinModelPortal:Q9M175Proteomes:UP000006548Reactome:R-ATH-427975RefSeq:NP_190154.1scanprosite:PS01022
SMR:Q9M175STRING:3702.AT3G45680.1SUPFAM:SSF103473TAIR:AT3G45680TMHMM:TMhelixUniGene:At.36001UniProt:Q9M175
Coordinates (TAIR10) chr3:+:16770995..16772908
Molecular Weight (calculated) 61253.30 Da
IEP (calculated) 8.80
GRAVY (calculated) 0.42
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLVSGDKE AQISGDPGSK RGGWITFPFM LATLLGLSVT SFGWVMNLIV FLIEEFNIKS IAAAQISNVA NGCLSMLPVV AAILADSFFG NIPVIAASSF
101: ISLLGIVLLT LIASLDYLRP RPCEAGSVLC TPPSKLHLGI LYTALALVTT GAGGTRFTMA SAGANQYEKP KEQGSFFNWY FLTLYAGAIT GATAIVYIQD
201: NASWKLGFGL CAAANLISFI VFVSGKRYYK HDKPMGSPFT SLIRVVVSAT VKRKAVISCN EEDYHHYGLE KEVKTSAAMP SKSFRFLNRA ALMTKDDLNQ
301: KEGSVNNIWR LCSVQEVEDF KAILRVFPLW LSIIFVSTPM VMQTSLIVLQ ALVTDRGLGP NFKVPAGSLQ VIIIITACIV IIMNNWLVFP MYKKLTHKLL
401: TPLQKVGIGQ VLTILSMALS AVVEAKRLKT VENGHPMSVL WLFPPLVIVG IGEAFQFPAN IELFYGEFPE SLRNTATSLT SVVIGISFYL STALIDLIQR
501: TTAWLPNDIN HGRVDNVYWL LVIGGILNFG YFLVCSWVYK YRNLKDNDQE QDPKDGTM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)