AT3G45600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tetraspanin3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of TETRASPANIN family | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
tetraspanin3 (TET3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: tetraspanin4 (TAIR:AT5G60220.1); Has 665 Blast hits to 663 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 0; Plants - 435; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:16733973..16735854 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31890.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.72 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.25 | ||||||||||||||||||||||||||||||||||||||||
| Length | 285 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRTSNHLIGL VNFLTFLLSI PILGGGIWLS SRANSTDCLR FLQWPLIVIG ISIMVVSLAG FAGACYRNKF LMWLYLVVML LIIAALIGFI IFAYAVTDKG 101: SGRTVLNRGY LDYYLEDYSG WLKDRVSDDS YWGKISSCLR DSGACRKIGR NFNGVPETAD MFFLRRLSPV ESGCCKPPTD CGFSYVNETG WDTRGGMIGP 201: NQDCMVWSND QSMLCYQCSS CKAGVLGSLK KSWRKVSVIN IVVLIILVIF YVIAYAAYRN VKRIDNDEPA GEARMTKSHP SHFHL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)