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AT3G45590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : splicing endonuclease 1
Curator
Summary (TAIR10)
Encodes a catalytic subunit of tRNA splicing endonuclease.
Computational
Description (TAIR10)
splicing endonuclease 1 (SEN1); FUNCTIONS IN: tRNA-intron endonuclease activity, nucleic acid binding, nuclease activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; LOCATED IN: tRNA-intron endonuclease complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-intron endonuclease (InterPro:IPR006676), tRNA intron endonuclease, catalytic domain-like (InterPro:IPR006677), Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal (InterPro:IPR011856), tRNA intron endonuclease, N-terminal (InterPro:IPR006678); BEST Arabidopsis thaliana protein match is: splicing endonuclease 2 (TAIR:AT5G60230.2); Has 489 Blast hits to 489 proteins in 224 species: Archae - 131; Bacteria - 0; Metazoa - 123; Fungi - 137; Plants - 68; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1676eggNOG:KOG4685EMBL:BT024625EnsemblPlants:AT3G45590EnsemblPlants:AT3G45590.1EnsemblPlants:AT3G45590.2entrez:823701
ExpressionAtlas:Q2HIF6Gene3D:3.40.1350.10GeneID:823701GO:GO:0000213GO:GO:0003676GO:GO:0006388Gramene:AT3G45590.1
Gramene:AT3G45590.2hmmpanther:PTHR21227hmmpanther:PTHR21227:SF0InterPro:IPR006676InterPro:IPR006677InterPro:IPR006678InterPro:IPR011856
KEGG:ath:AT3G45590KO:K15322OMA:VYKLKFRPANTHER:PTHR21227PaxDb:Q2HIF6Pfam:PF01974Pfam:PF02778
Pfam:Q9M1E8PhylomeDB:Q2HIF6ProteinModelPortal:Q2HIF6RefSeq:NP_001078245.1RefSeq:NP_190145.1SMR:Q2HIF6STRING:3702.AT3G45590.1
SUPFAM:SSF53032TAIR:AT3G45590tair10-symbols:ATSEN1tair10-symbols:SEN1UniGene:At.22349UniGene:At.70243UniProt:Q2HIF6
UniProt:Q9M1E8
Coordinates (TAIR10) chr3:+:16733062..16733775
Molecular Weight (calculated) 27360.90 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.23
Length 237 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPRWKWKGA EAKALAEPVS KTVSELRSSL TQTEALGFLS SCNVLLSVES EEAELLDRCC FGRLVVGAEK DKRWIQLSFE EAFFLFYKLK CIKICLHGRS
101: LENEVDLWRS MSSFKQDFAI LYKAYSHLRS KNWIVRSGLQ YGVDFVVYRH HPSLVHSEYA VLVQSIGGND RLKVWSDIHC SVRLTGSVAK SLLVLYVNRK
201: VNTEKMNLPL CLEDYTVEEQ TIRRWSPELS REDETRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)